Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7g01
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0215 - 15716832-15717699,15717809-15717938,15718038-15718173     39   0.003
02_01_0544 - 3992381-3992500,3992718-3992757,3993121-3993203,399...    32   0.48 
10_02_0086 - 5112095-5112185,5112487-5112599,5113325-5113431,511...    31   1.1  
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916...    30   1.5  
12_01_0918 + 9072774-9072863,9073385-9073539,9073834-9074213,907...    29   4.5  
12_01_0911 + 8868557-8868664,8869415-8869420,8869774-8869928,887...    29   4.5  

>09_04_0215 - 15716832-15717699,15717809-15717938,15718038-15718173
          Length = 377

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +2

Query: 20  IFHNSSIEVMRKSSQQESIVSWDRSYYSSLHEICKENNDTPPFVSIVLGDEA--SSTSGN 193
           + H+        SS    I SW  S    +H+   + + TPP  +  +GD A  ++T+G 
Sbjct: 209 LHHHHPSGAAATSSYSGLISSWPSSRSHIIHDAWLDASSTPPLSTTSMGDAATTTTTAGG 268

Query: 194 LTDSSTQTETYVTLPYNGSVND 259
            + SST T +  T P+ G   D
Sbjct: 269 ESSSSTPTVSTATTPFIGGSID 290


>02_01_0544 -
           3992381-3992500,3992718-3992757,3993121-3993203,
           3993322-3993552,3993661-3993705,3993958-3994079,
           3994408-3994564,3994713-3994778,3994872-3994994
          Length = 328

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +2

Query: 20  IFHNSSIEVMR--KSSQQESIVSWDRSYYSSLHEICKENNDTPPFVSIVLGDEASSTS 187
           +F NS++ V+    S + ES   W+ S+Y S++ I  E  D P F+  VL +++S+ S
Sbjct: 203 VFPNSNLVVVDWFTSGRYESGEKWNFSFYKSINHILLE--DQPLFIDSVLLEQSSNFS 258


>10_02_0086 -
           5112095-5112185,5112487-5112599,5113325-5113431,
           5113782-5113860,5114000-5114089,5114628-5114882,
           5117025-5117174,5117634-5117933
          Length = 394

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 91  AIPRNNRFLLRAFTHHFNRTVVKNPNVFS 5
           AIP+ ++ ++  +T H N  V K+PN F+
Sbjct: 294 AIPKGSKIMICPYTVHLNPVVYKDPNTFN 322


>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
            14291855-14292025,14292560-14292647,14292711-14292802,
            14292920-14293384,14293860-14294633,14294890-14295087,
            14296940-14297374,14297455-14297688,14298042-14298323
          Length = 1596

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/83 (28%), Positives = 34/83 (40%)
 Frame = +2

Query: 140  PPFVSIVLGDEASSTSGNLTDSSTQTETYVTLPYNGSVNDASLSFSKDFNINDLLSNGNE 319
            P FV + L ++ SS  GN+        +   LP NG V     S +K  + + +L   + 
Sbjct: 822  PDFVEL-LHEKLSSIPGNVGSKEFANSSNSFLPQNGIVGSERASSTK--SSSSVLQGSSG 878

Query: 320  NFQQSLASKRYRRNSSDGDEKDS 388
            NF   L       N SD  E  S
Sbjct: 879  NFVDFLTGDFDMPNQSDATENTS 901


>12_01_0918 +
           9072774-9072863,9073385-9073539,9073834-9074213,
           9074299-9075273,9076001-9076134
          Length = 577

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 134 DTPPFVSIVLGDEASSTSGNLTDSSTQTETYVTLPYNGSV 253
           DTPP V    GDE+ + +   T  ST+ +   TL YN +V
Sbjct: 426 DTPPVVFDYTGDESDNATMQFTTKSTKVK---TLRYNETV 462


>12_01_0911 +
           8868557-8868664,8869415-8869420,8869774-8869928,
           8870145-8871031,8871079-8871123,8872528-8872572,
           8873025-8873513,8873603-8873733
          Length = 621

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 134 DTPPFVSIVLGDEASSTSGNLTDSSTQTETYVTLPYNGSV 253
           DTPP V    GDE+ + +   T  ST+ +   TL YN +V
Sbjct: 471 DTPPVVFDYTGDESDNATMQFTTKSTKVK---TLRYNETV 507


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,836,962
Number of Sequences: 37544
Number of extensions: 286440
Number of successful extensions: 853
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)