Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7g01
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038605-4|AAK68679.1|  122|Caenorhabditis elegans Hypothetical ...    29   4.0  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    28   6.9  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    28   6.9  
AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical...    27   9.2  
AF000194-5|AAK39377.2|  616|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AF038605-4|AAK68679.1|  122|Caenorhabditis elegans Hypothetical
           protein C02B10.2 protein.
          Length = 122

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = +2

Query: 161 LGDEASSTSGNLTDSSTQTETYVTLPYNGSVNDASLSFSKDFNINDLLSNGNENFQQSLA 340
           L  +  + +  L D S   +    LPY G +ND+++  +      D L       Q+ +A
Sbjct: 42  LNSDCETMAEYLRDLSEYKQPVDLLPYVGKLNDSTIRVNNTHQKLDDLLERLTKLQRQIA 101

Query: 341 SKRYRRNSS 367
            + Y++ +S
Sbjct: 102 RETYKKKNS 110


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
           lineage protein 13 protein.
          Length = 2248

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 269 SFSKDFNINDLLSNGNENFQQSLASKRYRRNSSDGDEKDS 388
           S  K+F+     S+G E+FQ+SL  +  + +SS   + DS
Sbjct: 614 SNEKEFSYEPGESSGEEDFQKSLLEQDNQSSSSSDSDSDS 653


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
           protein LIN-13 protein.
          Length = 2248

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 269 SFSKDFNINDLLSNGNENFQQSLASKRYRRNSSDGDEKDS 388
           S  K+F+     S+G E+FQ+SL  +  + +SS   + DS
Sbjct: 614 SNEKEFSYEPGESSGEEDFQKSLLEQDNQSSSSSDSDSDS 653


>AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical
           protein Y38H6C.17 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 213 CVELSVKFPEVELASSPSTILTKGGVSLFSLH 118
           C  L+V F +  L    +++   GG+SL+S+H
Sbjct: 53  CFSLAVSFKQAGLWGGFASVFIIGGLSLYSMH 84


>AF000194-5|AAK39377.2|  616|Caenorhabditis elegans Hypothetical
           protein ZC328.3a protein.
          Length = 616

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
 Frame = +2

Query: 83  WDRSYYSSLHEICKENNDTPPFVSIVLGDEASSTSG--NLTDSS------TQTETYVTLP 238
           WD  Y S   E     N TPP  S     + +ST    NL+  S       +TE      
Sbjct: 199 WDMVYNS---EDKNSQNQTPPDGSTPASTKNTSTENMTNLSSRSFNSSISPRTEASTLKN 255

Query: 239 YNGSVNDASLSFSKDFNINDLLSNGNENFQQ 331
            N   N +  S S DF+  D  ++ +E F+Q
Sbjct: 256 NNDKDNTSQSSTSSDFHDEDSATHFSEQFEQ 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,485
Number of Sequences: 27780
Number of extensions: 275854
Number of successful extensions: 879
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)