Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7f24
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   3.8  
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    25   8.9  

>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 236 SSVMRRALSVAFKPIPGTEVWKIRVLAVTSR 328
           S + R+ L   F P+   E+WK+RV    S+
Sbjct: 651 SKLTRKVLYYLFSPLFTLELWKLRVRGALSK 681


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 320 TSRDLSRNILKNNLLKD*VEGVHKEGS 400
           T+++    IL+++LL + V+G H EGS
Sbjct: 345 TNKERLEVILESDLLNNTVDGTHLEGS 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,259
Number of Sequences: 5004
Number of extensions: 52342
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)