Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7f19
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    28   0.91 
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.1  

>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +2

Query: 443 ISKPPKRSIIYLWREYAHTLPPETISRLRTMLDADEPFKPDQAY 574
           ISKPP +S+I L  E  HTL P   S L  + D    F+ D++Y
Sbjct: 273 ISKPPTKSLIRLLAE--HTLNPVEKSVLLALSD----FRQDESY 310


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 446 SKPPKRSIIYLWREYAHTLPPETISRLRTMLDADEPFK 559
           S P   S    WR ++H +PP  +S L T  D ++P +
Sbjct: 602 SSPRDDSTPLSWRSHSHPIPPVQVSPLFTS-DKNDPLQ 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,367
Number of Sequences: 5004
Number of extensions: 44782
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)