Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7f19
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0168 - 15295442-15295477,15295478-15295552,15295660-152957...    30   1.2  
07_03_1055 - 23612968-23613038,23614625-23614763,23614854-236150...    29   2.2  
06_01_0597 - 4312592-4313893                                           28   5.0  
12_01_0421 - 3321590-3323692                                           28   6.6  
12_01_0106 - 833236-833568,835657-836098,837117-837227,837427-83...    27   8.7  

>09_04_0168 -
           15295442-15295477,15295478-15295552,15295660-15295722,
           15296095-15296319,15296421-15296562,15296678-15296839,
           15298148-15298320,15300352-15300882
          Length = 468

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -3

Query: 423 STAPCLRKHLAWARAARFANFTSVAFGPFGLAGFGRGL 310
           STA   R H  WA  +RF         P G A  G G+
Sbjct: 69  STAAASRLHRMWAEFSRFVRLHGNQIAPLGFASLGLGV 106


>07_03_1055 -
           23612968-23613038,23614625-23614763,23614854-23615021,
           23615341-23616045,23616647-23616847
          Length = 427

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 208 VRGKPGRSRSCFSGFRNRQL 149
           VRG  G +RSC SGF NR++
Sbjct: 14  VRGGAGEARSCRSGFSNRRI 33


>06_01_0597 - 4312592-4313893
          Length = 433

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 491 AHTLPPETISRLRTMLDADEPFKPDQAYEYFVN 589
           A  LPPE  +RL +M+D  +   P     YF N
Sbjct: 267 ARALPPEAETRLHSMIDTRQRLSPPLPPGYFGN 299


>12_01_0421 - 3321590-3323692
          Length = 700

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 485 EYAHTLPPETISRLRTMLDA 544
           E A   PPET+ RLR+M DA
Sbjct: 253 ESAPPYPPETVDRLRSMADA 272


>12_01_0106 -
           833236-833568,835657-836098,837117-837227,837427-837755
          Length = 404

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 205 LPTVCHGTSATVRSGHHHSWT*SSCATQIFAAQVREASTETGQTERS 345
           LP V   T+    + HH     SSCA Q  AA    +S++   T  S
Sbjct: 194 LPPVILDTTVRATNNHHPPAASSSCAAQSPAAAATSSSSDMMMTSTS 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,775,071
Number of Sequences: 37544
Number of extensions: 315799
Number of successful extensions: 780
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)