Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7f19
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    28   5.9  
Z75714-6|CAE54930.1|  532|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z75714-5|CAB00065.2|  581|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD contain...    27   7.7  
AF043697-4|AAO38636.1|  431|Caenorhabditis elegans Hypothetical ...    27   7.7  
AF043697-3|AAB97558.1|  548|Caenorhabditis elegans Hypothetical ...    27   7.7  
AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein...    27   7.7  

>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
           translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = +2

Query: 494 HTLPPETISRLRTMLDADEPF-----KPDQAYEYFVNMKK 598
           H L P+TI  L+ ++    PF     K D+ YEY  N +K
Sbjct: 584 HGLEPQTIESLKLLIKGKTPFVIALNKIDRLYEYESNPRK 623


>Z75714-6|CAE54930.1|  532|Caenorhabditis elegans Hypothetical
           protein ZC434.9b protein.
          Length = 532

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 139 KLRWIRGRCLGHIALNKNQKQSF 71
           K RW R RC G + LN+N    F
Sbjct: 272 KDRWFRDRCCGGVDLNRNYDWHF 294


>Z75714-5|CAB00065.2|  581|Caenorhabditis elegans Hypothetical
           protein ZC434.9a protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 139 KLRWIRGRCLGHIALNKNQKQSF 71
           K RW R RC G + LN+N    F
Sbjct: 272 KDRWFRDRCCGGVDLNRNYDWHF 294


>AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD containing
           protein protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 90  KIRNSPFITSIVNDWFEQNFFLQIRPFVR 4
           K RN+  ++    DWF  N F+ I  + R
Sbjct: 211 KFRNNEIVSKFREDWFSSNGFVTINVYCR 239


>AF043697-4|AAO38636.1|  431|Caenorhabditis elegans Hypothetical
           protein F56C11.6b protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 535 HCTQSRYRLGR*RMSIFTP*VNDAAFRWLRNTF 437
           HCT+ RY LG+  +S F P  ND     +  T+
Sbjct: 333 HCTEMRYVLGKGIISKFRPNDNDKKMLHVMTTY 365


>AF043697-3|AAB97558.1|  548|Caenorhabditis elegans Hypothetical
           protein F56C11.6a protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 535 HCTQSRYRLGR*RMSIFTP*VNDAAFRWLRNTF 437
           HCT+ RY LG+  +S F P  ND     +  T+
Sbjct: 450 HCTEMRYVLGKGIISKFRPNDNDKKMLHVMTTY 482


>AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein
           protein 1 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 90  KIRNSPFITSIVNDWFEQNFFLQIRPFVR 4
           K RN+  ++    DWF  N F+ I  + R
Sbjct: 211 KFRNNEIVSKFREDWFSSNGFVTINVYCR 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,028,800
Number of Sequences: 27780
Number of extensions: 252428
Number of successful extensions: 627
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)