Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7f17
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    30   0.22 
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    28   1.2  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   1.5  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    27   2.0  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    27   2.0  
SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.6  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    25   6.2  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    25   6.2  
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy...    25   6.2  
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    25   8.3  
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    25   8.3  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   8.3  

>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 19/86 (22%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
 Frame = +1

Query: 328 VSLKLKKGEIRGSMNKNGVKVMKWVDKRQLLMLSTLKEDKDELVNTGRKNRKTYE-DIKK 504
           V+ +L+   ++ S + N +  ++  ++   L + ++ ++KD L+N   +  K+YE ++ +
Sbjct: 504 VTKELETLRMKNSNDLNEIHDLREENEGLTLKIDSITKEKDRLINELEQRIKSYEVNVSE 563

Query: 505 PTCVL-TYNNKIKDVD--FSDQMSAY 573
               +  Y NK+KD +  +++ M+A+
Sbjct: 564 LNGTIDEYRNKLKDKEETYNEVMNAF 589


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
 Frame = +1

Query: 247 LAEQLLSLKTRYCGTLRSNR-------RGLPKNIVSLKLKKGEIRGSMNKNGVKVMKWVD 405
           L ++ + L    C +LR  +       R L + I++++++   +R   +   V+  + ++
Sbjct: 319 LPDKAIDLVDEACSSLRLQQESKPDELRRLDRQIMTIQIELESLRKETDTTSVERREKLE 378

Query: 406 KRQLLMLSTLKEDKDELVNTGRKNRKTYEDIKK 504
            +    L+ LKE++D+L     + RK  + IKK
Sbjct: 379 SK----LTDLKEEQDKLSAAWEEERKLLDSIKK 407


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 511 CVLTYNNKIKDVDFSDQMSAYYLFYIK 591
           C+L  NN+++ VD+S   +AY   Y++
Sbjct: 133 CILVQNNELEVVDWSFHAAAYLFKYLR 159


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 140 ESWPKSACRGISPGADEENYVPLAGAERLSQVFVKNWLNNFYLSKPV 280
           ++WP    RG S   DE  Y  L    R S    +NW  N Y  K +
Sbjct: 314 DAWPLGGFRGESDLDDEYIYESLVNYSRSSLPSAENW--NVYSKKDI 358


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 226 ISGVCKELAEQLLSLKTRYCGTLRSN 303
           +SG+ + L +QLL L+ + CG ++ N
Sbjct: 312 VSGIGRVLEQQLLGLEIKTCGDIQRN 337


>SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 87

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 567 RHLVAEVNIFYFVIIC*DTCRLFYIFVCLPIF 472
           RHL+  +NIF F I       LF IF+ +P+F
Sbjct: 59  RHLIHGINIFSFSI------SLFLIFLTIPLF 84


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 457 VNTGRKNRKTYEDIKKPTCVLTYNNKIKDVDFSDQMSAYYLF 582
           V +   +  T +   KPT   +Y N  KD  F D ++   LF
Sbjct: 101 VESDMSSHNTLDRNSKPTVSHSYTNSSKDEKFLDPIALQNLF 142


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +1

Query: 436 KEDKDELVNTGRKNRKTYEDIKKPTCVLTYNNKIKDVDFSDQMSAY 573
           K+++DE V   R+N+K  +D KK    +T +NK  D   ++  SAY
Sbjct: 343 KKEQDENVRRKRENKKRRKDQKKEG--ITSSNK-NDDSGNEGSSAY 385


>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 436 KEDKDELVNTGRKNRKTYEDIKKPTCVLTYNNKIK 540
           K  K E  N G K  K  E + K    +T NN +K
Sbjct: 27  KRKKGERKNVGDKGEKLNEKVLKKAKSVTTNNSLK 61


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 82  WRFHNSLFVTASVNSKQNVRKLAQISL 162
           W   N +   ++ NS+QN+RKL +  L
Sbjct: 23  WMDPNEISEISNANSRQNIRKLVKDGL 49


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 82  WRFHNSLFVTASVNSKQNVRKLAQISL 162
           W   N +   ++ NS+QNVRKL +  L
Sbjct: 23  WMDPNEISEISNANSRQNVRKLIKDGL 49


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 218 ERLSQVFVKNWLNNFYLSKPVIAVP*DQI 304
           +R  + F + +LN  YL+KP+  V  +Q+
Sbjct: 575 DRSCESFTRQFLNAIYLAKPISEVGAEQL 603


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,946
Number of Sequences: 5004
Number of extensions: 48899
Number of successful extensions: 156
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)