Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7f17
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U40423-3|AAA81452.1|  327|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AC024779-4|AAK68484.1|  439|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z81568-2|CAB04590.1|  276|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U80843-6|AAB37971.1|  345|Caenorhabditis elegans Skn-1 dependent...    27   10.0 

>Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical
           protein R09A8.2 protein.
          Length = 891

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 487 YEDIKKPTCVLTYNNKIKDVD-FSDQM 564
           Y D K+P  +L+Y  K+ DVD FSD +
Sbjct: 133 YNDGKEPRSLLSYREKMADVDKFSDDL 159


>U40423-3|AAA81452.1|  327|Caenorhabditis elegans Hypothetical
           protein C24H10.2 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 368 IDPLISPFFNLSDTIFLGSPL--RFDLRVPQ*RVLRDRSCSANSLQTPEIIVPH 213
           ID  ISPF    D+IFL  PL  +   R+ + R   D+        TP+II P+
Sbjct: 100 IDSYISPFSPSPDSIFLRIPLLPQDYARIEEARASLDQLVRKCHQMTPKIIPPN 153


>AC024779-4|AAK68484.1|  439|Caenorhabditis elegans Hypothetical
           protein Y43B11AL.1 protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +1

Query: 133 NVRKLAQISLPRNFTWCGR---RKLCPSRWCGTIISGVCKEL-AEQLLSLKTRYCGTLR 297
           N+R L+ + L +NFT C +    +   +  C   +  + KE+  E+ +++ T  C T+R
Sbjct: 142 NIRNLSSLLLNKNFTNCQKLEVHETAETEVCPLDLEEIVKEVRVEKEINIYTTQCETVR 200


>Z81568-2|CAB04590.1|  276|Caenorhabditis elegans Hypothetical
           protein K08E3.2 protein.
          Length = 276

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 436 KEDKDELVNTGRKNRKTYEDIKKPTCVLTYNNKIKD 543
           KEDK+E  +  ++++K  +  KK T     NN+ KD
Sbjct: 86  KEDKEEKKDDSKEDKKDEDHEKKKTAEEKENNEKKD 121


>U80843-6|AAB37971.1|  345|Caenorhabditis elegans Skn-1 dependent
           zygotic transcriptprotein 4 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 400 VDKRQLLMLSTLKEDKDELVNTGRKNRKTY 489
           +D+R  L LS + ED +EL+   RKN + Y
Sbjct: 77  IDERDELDLSPIHEDPNELIIDVRKNIRWY 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,323,099
Number of Sequences: 27780
Number of extensions: 274166
Number of successful extensions: 753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)