Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7f14
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    65   8e-12
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   2.0  
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|...    27   3.5  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   4.6  
SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces...    26   4.6  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.1  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   8.0  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    25   8.0  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   8.0  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   8.0  

>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 65.3 bits (152), Expect = 8e-12
 Identities = 38/119 (31%), Positives = 60/119 (50%)
 Frame = +1

Query: 256 ILKVMGSCNSSLQFEFPLQRKNGEYEMIHGYRSQHSVHRLPCKGGIRFSDQVNLEEVKAL 435
           +L ++      L+F    +   G   +  GYR Q +    P KGG+RF   VNL  +K L
Sbjct: 35  VLPIISIPERVLEFRVTWEDDKGNCRVNTGYRVQFNSALGPYKGGLRFHPSVNLSILKFL 94

Query: 436 AALMTYKCACSNIPFGGSKGGVAINPKQYTIAELQRITRRYTLELAKKNYIGAGIDVPS 612
                +K A + +P GG KGG   +PK  +  E++R ++ +  +L +  YIG   DVP+
Sbjct: 95  GFEQIFKNALTGLPMGGGKGGSDFDPKGKSDNEIRRFSQAFMRQLFR--YIGPQTDVPA 151


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 382  KGGIRFSDQVNLEEVKALAALMTYKCACSNIPFGGSKGGV 501
            KGG  F    + +   A +   T  C  S +PFG   GG+
Sbjct: 1179 KGGFNFDFSSSTDTYAATSYAYTATCTQSFLPFGLGNGGI 1218


>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 127 PSFYRMVEYFYHNAVKVCEPSLEEYLKKYTHL 222
           P  +  + YFY    K C   ++ +LKK+ ++
Sbjct: 130 PILFIAIFYFYETWTKACGKGIKHFLKKWRNM 161


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -1

Query: 255  SGDPLLSLLIRQMSVFLQILLEAWFANFNRVVIEVLDHPVKTGIRVIDYSSQMLR 91
            SG+ L +L I   +   Q+LLE  +AN NR+     +  +   +R +D S+  L+
Sbjct: 862  SGNELANLSISSTA---QVLLETLYANGNRLSSFPKNEALSKSLRFLDISTNNLQ 913


>SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
 Frame = +1

Query: 157 YHNAVKVCEPSLEEYLKKYTHLSDKKR-----KQRVSGIL---KVMGSC----NSSLQFE 300
           +  ++ V + ++ E+ K+  HLS  K+      +  S  L   ++   C    N+ L   
Sbjct: 33  FTKSLAVLDDNVSEFRKRMNHLSATKQILDNFNESFSSFLYGLQINAFCVDYENAPLSES 92

Query: 301 FPLQRKNGEYEMIHGYRSQHSVHRLPCKGGI 393
           F LQ K  +++     R+ HS+   P  GG+
Sbjct: 93  FLLQAKKDQFKATLMTRTGHSISDPPYDGGV 123


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 508 NPKQYTIAELQRITRRYTLELAKKNY 585
           N + +   +LQ+ITR Y + L +K Y
Sbjct: 421 NNQSFNSCQLQKITRGYWISLQQKEY 446


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
 Frame = -2

Query: 644 TSPDRTCSRRVLGTSMPAPI*FFFASSKVYLLVILCSSAIVYCFG-------FIATPPLE 486
           +SP    +  V+ TS+P+ +  F +S+  Y   +  S+  +   G       F ++PP  
Sbjct: 344 SSPPFYSNSSVIPTSVPSSVSSFTSSNSSYTTTLTASNTSITYTGTGTGSATFTSSPPFY 403

Query: 485 PPNGMLEQAHLYVIRAASAFTSSKFTWSENL 393
             + ++  +   V  + S+FTSS  +++  L
Sbjct: 404 SNSSVIPTS---VPSSVSSFTSSNSSYTTTL 431


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 207 LQILLEAWFANFNRVVIEVLDHPVKTGIRVIDYSSQMLRYFV 82
           +Q+ L  WF+ F      +L+HPVK  I  ID   + L  FV
Sbjct: 244 VQVCLFCWFSFF------ILNHPVKQRIFSIDNPDEYLVPFV 279


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 446 IRAASAFTSSKFTWSENLMPPLQGNRWTLCWDL*PW 339
           +++ +A T+   TW + L   L  NR T   DL PW
Sbjct: 226 LQSVTAVTTLAQTWPKLLNLSLANNRITSLSDLDPW 261


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 534 TAENNEKIYFRTCEEELYRCRHRRS 608
           T +  + IYFR C    YRC  R S
Sbjct: 546 TLKGKKFIYFRICITNYYRCNVRDS 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,126,427
Number of Sequences: 5004
Number of extensions: 70756
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)