Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7f10
(699 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L42856-1|AAA75522.1| 118|Homo sapiens RNA polymerase II transcr... 137 4e-32
BC065000-1|AAH65000.1| 118|Homo sapiens transcription elongatio... 137 4e-32
BC013306-1|AAH13306.1| 118|Homo sapiens transcription elongatio... 137 4e-32
AC004493-1|AAC08452.1| 72|Homo sapiens elongin B protein. 75 3e-13
AB065679-1|BAC45260.1| 919|Homo sapiens seven transmembrane hel... 33 1.3
CR407662-1|CAG28590.1| 81|Homo sapiens NEDD8 protein. 31 3.0
D23662-1|BAA04889.1| 81|Homo sapiens ubiquitin-like protein pr... 31 4.0
BC104664-1|AAI04665.1| 81|Homo sapiens neural precursor cell e... 31 4.0
BC104201-1|AAI04202.1| 81|Homo sapiens neural precursor cell e... 31 4.0
BC104200-1|AAI04201.1| 81|Homo sapiens neural precursor cell e... 31 4.0
BC107415-1|AAI07416.1| 550|Homo sapiens ZNF291 protein protein. 30 9.1
BC070197-1|AAH70197.1| 552|Homo sapiens ZNF291 protein protein. 30 9.1
AF242528-1|AAK29205.1| 1399|Homo sapiens zinc finger protein 291... 30 9.1
AB040887-1|BAA95978.1| 1265|Homo sapiens KIAA1454 protein protein. 30 9.1
>L42856-1|AAA75522.1| 118|Homo sapiens RNA polymerase II
transcription factor SIII p18 subunit protein.
Length = 118
Score = 137 bits (331), Expect = 4e-32
Identities = 67/110 (60%), Positives = 85/110 (77%)
Frame = +3
Query: 114 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 293
MDVFLMIRR K T+FTDAKE++TV ELK+++EGILK PP Q L+ KD QL++D KTL E
Sbjct: 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY-KDDQLLDDGKTLGE 59
Query: 294 FGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQET 443
G TS TA+ PA +GLA R ++ FEAL + P+SSPP+LPDVMK Q++
Sbjct: 60 CGFTSQTARPQAPATVGLAFRADD-TFEALCIEPFSSPPELPDVMKPQDS 108
>BC065000-1|AAH65000.1| 118|Homo sapiens transcription elongation
factor B (SIII), polypeptide 2 (18kDa, elongin B)
protein.
Length = 118
Score = 137 bits (331), Expect = 4e-32
Identities = 67/110 (60%), Positives = 85/110 (77%)
Frame = +3
Query: 114 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 293
MDVFLMIRR K T+FTDAKE++TV ELK+++EGILK PP Q L+ KD QL++D KTL E
Sbjct: 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY-KDDQLLDDGKTLGE 59
Query: 294 FGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQET 443
G TS TA+ PA +GLA R ++ FEAL + P+SSPP+LPDVMK Q++
Sbjct: 60 CGFTSQTARPQAPATVGLAFRADD-TFEALCIEPFSSPPELPDVMKPQDS 108
>BC013306-1|AAH13306.1| 118|Homo sapiens transcription elongation
factor B (SIII), polypeptide 2 (18kDa, elongin B)
protein.
Length = 118
Score = 137 bits (331), Expect = 4e-32
Identities = 67/110 (60%), Positives = 85/110 (77%)
Frame = +3
Query: 114 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 293
MDVFLMIRR K T+FTDAKE++TV ELK+++EGILK PP Q L+ KD QL++D KTL E
Sbjct: 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY-KDDQLLDDGKTLGE 59
Query: 294 FGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQET 443
G TS TA+ PA +GLA R ++ FEAL + P+SSPP+LPDVMK Q++
Sbjct: 60 CGFTSQTARPQAPATVGLAFRADD-TFEALCIEPFSSPPELPDVMKPQDS 108
>AC004493-1|AAC08452.1| 72|Homo sapiens elongin B protein.
Length = 72
Score = 74.5 bits (175), Expect = 3e-13
Identities = 35/63 (55%), Positives = 46/63 (73%)
Frame = +3
Query: 255 DSQLMEDEKTLAEFGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKS 434
D QL++D KTL E G TS TA+ PA +GLA R ++ FEAL + P+SSPP+LPDVMK
Sbjct: 1 DDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFEALCIEPFSSPPELPDVMKP 59
Query: 435 QET 443
Q++
Sbjct: 60 QDS 62
>AB065679-1|BAC45260.1| 919|Homo sapiens seven transmembrane helix
receptor protein.
Length = 919
Score = 32.7 bits (71), Expect = 1.3
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -3
Query: 208 SIIFFNSNTVVVSFASVKTVSFFRLIIKKTSIMLFC 101
S+ F++S+ +++SF S KT++ F + S++ FC
Sbjct: 713 SLHFWSSSCLLISFESQKTLNVFHFFVLHISVLFFC 748
>CR407662-1|CAG28590.1| 81|Homo sapiens NEDD8 protein.
Length = 81
Score = 31.5 bits (68), Expect = 3.0
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 126 LMIRRKKLT---VFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEF 296
++I+ K LT + D + T V +K+ +E +PP Q L Q M DEKT A++
Sbjct: 1 MLIKVKTLTGKEIEVDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ-MNDEKTAADY 59
>D23662-1|BAA04889.1| 81|Homo sapiens ubiquitin-like protein
protein.
Length = 81
Score = 31.1 bits (67), Expect = 4.0
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 126 LMIRRKKLT---VFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEF 296
++I+ K LT + D + T V +K+ +E +PP Q L Q M DEKT A++
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ-MNDEKTAADY 59
>BC104664-1|AAI04665.1| 81|Homo sapiens neural precursor cell
expressed, developmentally down-regulated 8 protein.
Length = 81
Score = 31.1 bits (67), Expect = 4.0
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 126 LMIRRKKLT---VFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEF 296
++I+ K LT + D + T V +K+ +E +PP Q L Q M DEKT A++
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ-MNDEKTAADY 59
>BC104201-1|AAI04202.1| 81|Homo sapiens neural precursor cell
expressed, developmentally down-regulated 8 protein.
Length = 81
Score = 31.1 bits (67), Expect = 4.0
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 126 LMIRRKKLT---VFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEF 296
++I+ K LT + D + T V +K+ +E +PP Q L Q M DEKT A++
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ-MNDEKTAADY 59
>BC104200-1|AAI04201.1| 81|Homo sapiens neural precursor cell
expressed, developmentally down-regulated 8 protein.
Length = 81
Score = 31.1 bits (67), Expect = 4.0
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 126 LMIRRKKLT---VFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEF 296
++I+ K LT + D + T V +K+ +E +PP Q L Q M DEKT A++
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ-MNDEKTAADY 59
>BC107415-1|AAI07416.1| 550|Homo sapiens ZNF291 protein protein.
Length = 550
Score = 29.9 bits (64), Expect = 9.1
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Frame = +3
Query: 159 TDAKETTTVL--ELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEFGLTSNTAKAHCP 332
TDA+ T L E+KKM G +P PS N S + + FG ++ T A
Sbjct: 159 TDAQSRPTSLAWEVKKMSPGRHVIPSPSTDRINVTS----NARRSLNFGGSTGTVPAPRL 214
Query: 333 APIGLALRKE-----NGEFEALELTPYSSPPDLPDVMKSQETNGQEQMD 464
AP G++ + G + E+TP S P + V K+ N ++ +
Sbjct: 215 APTGVSWADKVKAHHTGSTASSEITPAQSCPPM-TVQKASRKNERKDAE 262
>BC070197-1|AAH70197.1| 552|Homo sapiens ZNF291 protein protein.
Length = 552
Score = 29.9 bits (64), Expect = 9.1
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Frame = +3
Query: 159 TDAKETTTVL--ELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEFGLTSNTAKAHCP 332
TDA+ T L E+KKM G +P PS N S + + FG ++ T A
Sbjct: 160 TDAQSRPTSLAWEVKKMSPGRHVIPSPSTDRINVTS----NARRSLNFGGSTGTVPAPRL 215
Query: 333 APIGLALRKE-----NGEFEALELTPYSSPPDLPDVMKSQETNGQEQMD 464
AP G++ + G + E+TP S P + V K+ N ++ +
Sbjct: 216 APTGVSWADKVKAHHTGSTASSEITPAQSCPPM-TVQKASRKNERKDAE 263
>AF242528-1|AAK29205.1| 1399|Homo sapiens zinc finger protein 291
protein.
Length = 1399
Score = 29.9 bits (64), Expect = 9.1
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Frame = +3
Query: 159 TDAKETTTVL--ELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEFGLTSNTAKAHCP 332
TDA+ T L E+KKM G +P PS N S + + FG ++ T A
Sbjct: 159 TDAQSRPTSLAWEVKKMSPGRHVIPSPSTDRINVTS----NARRSLNFGGSTGTVPAPRL 214
Query: 333 APIGLALRKE-----NGEFEALELTPYSSPPDLPDVMKSQETNGQEQMD 464
AP G++ + G + E+TP S P + V K+ N ++ +
Sbjct: 215 APTGVSWADKVKAHHTGSTASSEITPAQSCPPM-TVQKASRKNERKDAE 262
>AB040887-1|BAA95978.1| 1265|Homo sapiens KIAA1454 protein protein.
Length = 1265
Score = 29.9 bits (64), Expect = 9.1
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Frame = +3
Query: 159 TDAKETTTVL--ELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEFGLTSNTAKAHCP 332
TDA+ T L E+KKM G +P PS N S + + FG ++ T A
Sbjct: 175 TDAQSRPTSLAWEVKKMSPGRHVIPSPSTDRINVTS----NARRSLNFGGSTGTVPAPRL 230
Query: 333 APIGLALRKE-----NGEFEALELTPYSSPPDLPDVMKSQETNGQEQMD 464
AP G++ + G + E+TP S P + V K+ N ++ +
Sbjct: 231 APTGVSWADKVKAHHTGSTASSEITPAQSCPPM-TVQKASRKNERKDAE 278
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,504,371
Number of Sequences: 237096
Number of extensions: 2198682
Number of successful extensions: 3519
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3512
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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