Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7f05
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.63 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.9  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    27   3.4  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   4.4  
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    26   5.9  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    25   7.8  

>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +1

Query: 385 IFNNNILSPNQNGCKAGSRGTKDLLLIDMTITQQVRRSKRNVHMAWID-YKKAYDSVPHT 561
           I+++NI SP ++     +    D  +ID + + Q R+SK   H+A+ D Y+ A+   P  
Sbjct: 197 IYDSNIASPKESSDAIDA----DHAMIDESRSTQRRKSKPKKHVAFTDEYQVAFSDKPGK 252

Query: 562 WLMRVLELYK 591
           +  + ++  K
Sbjct: 253 YFNQPMQYSK 262


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 244  DFMTSGITYLIYKSGNTSDPK 306
            DF  S + Y++Y SG+T  PK
Sbjct: 2866 DFEDSNLAYVLYTSGSTGKPK 2886


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 197 RSCELRIHLIQ*LCSPSGPGLFQFGIERTARETSTAEIVIESISLYDS 54
           R C+ R+H +    SP+G GL +  IE   R      I I +I+  DS
Sbjct: 158 RFCDDRVHALIYFISPTGHGLRELDIELMRRLAPRVNI-IPAIAKADS 204


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 394 NNILSPNQNGCKAGSRGTKDLLLIDMT 474
           N  L+PN  G    + GT+DLL +D T
Sbjct: 373 NPTLAPNPTGPSRVTSGTEDLLSLDAT 399


>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 616 ERSI-VWDLFYIALKLSLAMYEAQSHTLSYNQSKPYERSSYSAELVE*WSCQ 464
           +R+I +WDL    LKL+L  + A    L+ +   PY  S    ++V+ W  +
Sbjct: 184 DRTIKIWDLASGVLKLTLTGHIATVRGLAVSPRHPYLFSCGEDKMVKCWDLE 235


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +1

Query: 154 LHSYWIKWIRSSHERLAAQFQQ--ALELGSLPDFMTSGITYLIYKSGNTSDPK 306
           LH  W+KW+  S +     F      ELGSL   M    T  +    N SDP+
Sbjct: 145 LHKSWMKWLHISIQESQLTFPSVGTFELGSLSMEMRPE-TNNVVGYENPSDPE 196


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 167 GSSGSEVHMNAWQLNSNRPLSW 232
           G+S S  H  AW  NSN    W
Sbjct: 407 GASASSGHYQAWIRNSNNRAEW 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,672
Number of Sequences: 5004
Number of extensions: 65528
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)