Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7f05
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 61 9e-10
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 49 4e-06
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 38 0.006
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458... 35 0.053
04_04_0410 - 25010455-25011819 33 0.21
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 33 0.28
01_05_0402 + 21810906-21811831,21811875-21812472,21813119-21813391 32 0.37
11_06_0075 - 19829016-19829399 31 0.65
01_05_0218 - 19430404-19431189 30 1.5
08_01_0006 + 52469-52719,52805-52904,53285-53350,53688-53747,540... 29 2.6
06_03_0045 - 15844748-15845021,15846349-15846560 29 2.6
12_01_0621 - 5115642-5115881,5116029-5116229,5116333-5116528,511... 28 8.0
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 60.9 bits (141), Expect = 9e-10
Identities = 43/172 (25%), Positives = 88/172 (51%), Gaps = 5/172 (2%)
Frame = +1
Query: 82 TISAVDVSRAVRSMPNWKSPGPDGLHSYWIK--W--IRSSHERLAAQFQQA-LELGSLPD 246
T+ +D ++ +P K+PGPDG + +++K W I + RL A F ++L +
Sbjct: 313 TVKEIDSLMSI--IPADKAPGPDGFNGFFMKKCWHIIAQDYYRLVAHFHAGNVDL----E 366
Query: 247 FMTSGITYLIYKSGNTSDPKNYRPITCLPTIYKLLTSILRIKIQNHIFNNNILSPNQNGC 426
+ S L+ K + ++RPI+ + K++T +L ++Q I ++S N G
Sbjct: 367 ILNSSFITLVPKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGVILK--LVSDNHYGF 424
Query: 427 KAGSRGTKDLLLIDMTITQQVRRSKRNVHMAWIDYKKAYDSVPHTWLMRVLE 582
G + +D Q ++SKR + + +D++KA+D++ H+ ++ V++
Sbjct: 425 IKG-KTIQDCPAWPFEYIHQCQQSKREIVLLKLDFEKAFDTIEHSAILSVMQ 475
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 48.8 bits (111), Expect = 4e-06
Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Frame = +1
Query: 97 DVSRAVRSMPNWKSPGPDGLHS--YWIKWIRSSHERLAAQFQQALELGSLPDFMTSGITY 270
++++A+ + KSPGPDG + Y W + + A + + G +P+ +
Sbjct: 895 EIAQAIFQIGPLKSPGPDGFPARFYQRNWGTLKSDIILA-VRNFFQSGLMPEGVNDTAIV 953
Query: 271 LIYKSGNTSDPKNYRPITCLPTIYKLLTSILRIKIQNHIFNNNILSPNQNGCKAGSRGTK 450
LI K D K+YRPI+ +YK+++ L +++ + ++++S Q+ G T
Sbjct: 954 LIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPIL--DDLVSKEQSAFIQGRMITD 1011
Query: 451 D-LLLIDMTITQQVRRSKRNVHMAW-IDYKKAYDSVPHTWLMRVLELYKI 594
+ LL + + Q + + A+ +D KAYD V W L L K+
Sbjct: 1012 NALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRV--DWRFLELALNKL 1059
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 38.3 bits (85), Expect = 0.006
Identities = 29/103 (28%), Positives = 50/103 (48%)
Frame = +1
Query: 271 LIYKSGNTSDPKNYRPITCLPTIYKLLTSILRIKIQNHIFNNNILSPNQNGCKAGSRGTK 450
LI K G + YRPI+ K+L+ +L ++Q +F ++ +Q G G R
Sbjct: 975 LIQKPGKENTVDGYRPISLQNCSVKILSKVLATRLQ-RVF-LRMIHLDQTGFLKG-RCIS 1031
Query: 451 DLLLIDMTITQQVRRSKRNVHMAWIDYKKAYDSVPHTWLMRVL 579
+ L+ + Q R K + +D+ KA+DSV + L ++L
Sbjct: 1032 ENLIYATELIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKIL 1074
>11_04_0144 +
14044973-14044984,14045050-14045183,14045329-14045824,
14046097-14046117,14047504-14047767,14048635-14048715
Length = 335
Score = 35.1 bits (77), Expect = 0.053
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Frame = +1
Query: 97 DVSRAVRSMPNWKSPGPDGLHSYWIK--WIRSSHE--RLAAQFQQALELGSLPDFMTSGI 264
+V ++ + K+P PDG++ Y++K W S E LAA F L S I
Sbjct: 226 EVDNLIKVIQPDKAPSPDGINGYFLKKCWPIISQEFYWLAAHFHACYT--DLQPINKSFI 283
Query: 265 TYLIYKSGNTSDPKNYRPITCLPTIYKLLTSILR 366
T L+ K + +YRPI+ + KL S+++
Sbjct: 284 T-LVPKKSSPETVNDYRPISLMGISLKLPVSVVK 316
>04_04_0410 - 25010455-25011819
Length = 454
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 176 GSEVHMNAWQLNSNRPLSWDHSQIS 250
G VH+ W L+ RP+S DHSQ++
Sbjct: 151 GGAVHVYNWMLDERRPVSLDHSQVN 175
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 32.7 bits (71), Expect = 0.28
Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Frame = +1
Query: 280 KSGNTSDPKNYRPITCLPTIYKLLTSILRIKIQNHIFNNNILSPNQNGCKAGSRGT-KDL 456
K N +RPI+ +YK+ + +L +++ +F +I+S Q+ G T L
Sbjct: 177 KVHNPEHLSKFRPISLCNVLYKIASKVLANRLK--LFLPDIVSEFQSAFVPGRLITDSSL 234
Query: 457 LLIDMTITQQVRRSKRNVHMAWIDYKKAYDSVPHTWLMRVLELYKINPILCSFLSSCMGQ 636
+ + T + + +K+ ID KAYD + ++L L + + C+
Sbjct: 235 VAYECLNTIKKQSNKKPFFALKIDMMKAYDRIEWSYLHGCLMRLGFEQDWINTVMRCVTS 294
Query: 637 WSTFLSQPGQMTSSAAP 687
+ G++T + P
Sbjct: 295 TRYAIRINGELTDTVVP 311
>01_05_0402 + 21810906-21811831,21811875-21812472,21813119-21813391
Length = 598
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 159 QLLDQVDPKFT*TPGSSIPTGP*VGIT-PRFHDIWYH 266
++LD +DP+F+ G +I +G++ P HD+W H
Sbjct: 127 EVLDGIDPRFSHLTGGAIVNSLTIGVSWPPSHDLWNH 163
>11_06_0075 - 19829016-19829399
Length = 127
Score = 31.5 bits (68), Expect = 0.65
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +1
Query: 97 DVSRAVRSMPNWKSPGPDGLHSYWIK 174
++++ V S+P+ KSPGPDG + ++K
Sbjct: 68 EINKVVASLPSDKSPGPDGFNGDFLK 93
>01_05_0218 - 19430404-19431189
Length = 261
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Frame = +1
Query: 85 ISAVDVSRAVRSMPNWKSPGPDGLHSYWI-KWIRSSHE--------RLAAQFQQALEL-G 234
+ VD+SR+ NW +P PD + WI + +R +H+ R AA+ + A+EL
Sbjct: 99 LRCVDLSRS-----NWATPMPDDDAAAWIHRAVRRNHDDGLAGGHYRFAARVKVAVELVF 153
Query: 235 SLPDFMTSGITYLIYKSGNT 294
S P + G+ +L ++G+T
Sbjct: 154 SEPVSLVRGLVWLETRAGDT 173
>08_01_0006 +
52469-52719,52805-52904,53285-53350,53688-53747,
54029-54202,54932-54993,55934-56030,56487-56510
Length = 277
Score = 29.5 bits (63), Expect = 2.6
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Frame = +1
Query: 208 QFQQALELGSLPDFMTSGI-------TYLIYKSGNTSDPKNYRPITCLPTIYKLL-TSIL 363
Q Q +E+ S+ F +S I T L+ S ++SD +NY+ +TC P + +IL
Sbjct: 19 QQQNQIEIESMLSFQSSSIPPPPTPATMLLAPSSSSSDFRNYKFVTCSPADWPHHDLAIL 78
Query: 364 RIKIQNHIFNNNILSPNQNGCKAGSRGTKDLLL-IDMTITQQVRRSK 501
+ + NI+ + +R +D+ L T + RR K
Sbjct: 79 NDGLLRYAHEPNIIKYTKIAAMLPTRTIRDVALRCRWTKDNESRRGK 125
>06_03_0045 - 15844748-15845021,15846349-15846560
Length = 161
Score = 29.5 bits (63), Expect = 2.6
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +1
Query: 97 DVSRAVRSMPNWKSPGPDGLHSYWIK 174
D+ ++ +P+ K+PGPDG + +++K
Sbjct: 34 DMDSLIKVIPSDKAPGPDGFNGFFLK 59
>12_01_0621 -
5115642-5115881,5116029-5116229,5116333-5116528,
5116747-5117033
Length = 307
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 155 SPSGPGLFQFGIERTARETSTAEIVIESISLYD 57
+P+GP Q G+ T +ET +V+ + +YD
Sbjct: 30 TPAGPRPNQSGVTSTNKETGLGSLVVNNWQVYD 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,567,965
Number of Sequences: 37544
Number of extensions: 415658
Number of successful extensions: 944
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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