Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7f05
(688 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 66 3e-11
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 66 3e-11
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 64 7e-11
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 43 2e-04
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 31 1.0
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 29 2.4
U00035-2|AAA50644.2| 413|Caenorhabditis elegans Hypothetical pr... 29 4.1
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 27 9.5
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 65.7 bits (153), Expect = 3e-11
Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 1/184 (0%)
Frame = +1
Query: 97 DVSRAVRSMPNWKSPGPDGLHSYWIKWIRSSH-ERLAAQFQQALELGSLPDFMTSGITYL 273
++ +RS PN K+ G D + + ++K + + + +F + L ++P + T L
Sbjct: 551 EIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTL 610
Query: 274 IYKSGNTSDPKNYRPITCLPTIYKLLTSILRIKIQNHIFNNNILSPNQNGCKAGSRGTKD 453
I+K G+ + +NYRPI LP +YK+ T L +++ + + P + S T D
Sbjct: 611 IFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSL---DEAQPVEQAGFRRSFSTID 667
Query: 454 LLLIDMTITQQVRRSKRNVHMAWIDYKKAYDSVPHTWLMRVLELYKINPILCSFLSSCMG 633
+ + + R + + + +ID+KKA+DSV H + + L+ + L C
Sbjct: 668 HIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLKECYK 727
Query: 634 QWST 645
+T
Sbjct: 728 NCTT 731
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 65.7 bits (153), Expect = 3e-11
Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 1/184 (0%)
Frame = +1
Query: 97 DVSRAVRSMPNWKSPGPDGLHSYWIKWIRSSH-ERLAAQFQQALELGSLPDFMTSGITYL 273
++ +RS PN K+ G D + + ++K + + + +F + L ++P + T L
Sbjct: 290 EIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTL 349
Query: 274 IYKSGNTSDPKNYRPITCLPTIYKLLTSILRIKIQNHIFNNNILSPNQNGCKAGSRGTKD 453
I+K G+ + +NYRPI LP +YK+ T L +++ + + P + S T D
Sbjct: 350 IFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSL---DEAQPVEQAGFRRSFSTID 406
Query: 454 LLLIDMTITQQVRRSKRNVHMAWIDYKKAYDSVPHTWLMRVLELYKINPILCSFLSSCMG 633
+ + + R + + + +ID+KKA+DSV H + + L+ + L C
Sbjct: 407 HIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLKECYK 466
Query: 634 QWST 645
+T
Sbjct: 467 NCTT 470
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 64.5 bits (150), Expect = 7e-11
Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 1/180 (0%)
Frame = +1
Query: 109 AVRSMPNWKSPGPDGLHSYWIKWIRSSH-ERLAAQFQQALELGSLPDFMTSGITYLIYKS 285
A+RS PN K+ G D + + ++K + + + +F + L ++P + T LI+K
Sbjct: 384 ALRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKK 443
Query: 286 GNTSDPKNYRPITCLPTIYKLLTSILRIKIQNHIFNNNILSPNQNGCKAGSRGTKDLLLI 465
G+ + +NYRPI LP +YK+ T L +++ + + P + S T D +
Sbjct: 444 GDRENLENYRPICLLPVLYKVFTKCLLNRMRRSL---DEAQPVEQAGFRRSFSTIDHIHS 500
Query: 466 DMTITQQVRRSKRNVHMAWIDYKKAYDSVPHTWLMRVLELYKINPILCSFLSSCMGQWST 645
+ + R + + + +ID+KKA+D+V H + + L+ + L C +T
Sbjct: 501 LQRLLEVGREYQIPLTLVFIDFKKAFDTVEHQAIWKSLDEQGADGAYIDLLKECYKNCTT 560
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 43.2 bits (97), Expect = 2e-04
Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 8/206 (3%)
Frame = +1
Query: 7 IGHSEG-EWIQTVRRECESYKEMD-SITISAVDVSRAVRSMPNWKSPGPDGLHSYWIKWI 180
I H E +W + VRR K I+++++ M + GPDG+ I+ +
Sbjct: 300 ISHDEELKWRKNVRRNKRISKIAPLQDRITSIELHNMAIKMSPSAAIGPDGIAQIHIRKL 359
Query: 181 -RSSHERLAAQFQQALELGSLPDFMTSGITYLIYK-SGNTSDPKNYRPITCLPTIYKLLT 354
+ LA + +L +PD +I K + + +YRPI+ L I KLL
Sbjct: 360 PMCGYSFLAYLYNVSLSTNIIPDKWKKANVIMIPKPKKDPAIASSYRPISLLSPIAKLLE 419
Query: 355 SILRIKIQNHIFNNNILSP-NQNGCKAGSRGTKDLLLI--DMTITQQVRRSKRNVHMAWI 525
+ +I+ N+I SP +Q+G K T ++ + D+ ++ MA +
Sbjct: 420 KAILKRIK-----NSIESPAHQHGFKPEHSTTTAVIQVTNDIIGGLNMKNPPERAIMACL 474
Query: 526 DYKKAYDSVPHTWLMR-VLELYKINP 600
D + A+D VP L ++E I P
Sbjct: 475 DLRAAFDKVPTKKLCNDLMEAQGIEP 500
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 502 RNVHMAWIDYKKAYDSVPHTWLMRVLELYKINPILCSFLSSCMGQWST 645
R++ + +ID+KKA+DSV H + + L+ + L C +T
Sbjct: 35 RSLTLVFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECYKNCTT 82
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 535 KAYDSVPHTWLMRVLELYKINPILCSF 615
KA+D V H+ L++ L + INP+ C++
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNW 28
>U00035-2|AAA50644.2| 413|Caenorhabditis elegans Hypothetical
protein R01H2.2 protein.
Length = 413
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 61 YKEMDSITISAVDVSRAVRSMPNWKSPGPDGLHSYWIKWIRS 186
YKE D + + ++ RS WK D + ++ +WIR+
Sbjct: 198 YKEGDKVHMYGIEYENNARSESEWKHRN-DPIEDFYSEWIRT 238
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 508 VHMAWIDYKKAYDSVPHTWLMRVLELYKINPILCSFLSSCMGQWSTFLSQPGQMTSS 678
+ + ++D+ KA+D +PH L+ L + N L +++ + S F + GQ SS
Sbjct: 14 IDIIYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRS-FRVRIGQTLSS 69
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,600,163
Number of Sequences: 27780
Number of extensions: 359685
Number of successful extensions: 838
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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