Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7f03
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    75   1e-14
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    26   4.5  
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    26   4.5  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    26   4.5  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   7.9  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   7.9  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   7.9  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    25   7.9  

>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 5/98 (5%)
 Frame = +2

Query: 413 EARKAGTAPAAVDETGKDINPHIPQYIASAPWYYGTSGPT--LKHQR--PQEDREGQFTK 580
           +A+K  + P  +D    D NP+IP++I++APWY         L HQR   +E   G  + 
Sbjct: 33  KAQKRRSRP--MDNPDAD-NPYIPKFISTAPWYAQDDDAVERLAHQRIGKKETPSGGRSS 89

Query: 581 LD-KYYNKGVDVTKVATKFRKGACENCGAMTHKKKDCL 691
           ++  +Y +G  +   ATK+RKGACENCGAM+HK KDC+
Sbjct: 90  IEGSWYVRGKKLGPAATKYRKGACENCGAMSHKVKDCM 127


>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 398 AKELEEARKA---GTAPAAVDETGKDI-NPHIPQYIASAPWYYGT 520
           A E E+AR     G    AV +T  D+    IP Y+  AP Y+G+
Sbjct: 56  ACEKEKARSGHPKGACILAVRDTDGDVFGVFIPDYLIPAPHYFGS 100


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 389 WRKAKELEEARKAGTAPAAVDETGKDIN-PHIPQYIASAPWYYGTSGP 529
           W  +K    A +AG  P A+++T +D+N  +I  Y+   P+    SGP
Sbjct: 80  WVTSKLWCNAHRAGLVPLALEKTLQDLNLEYIDAYLIHWPFAL-LSGP 126


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 318 YHKFYAIKMTPKKTMSPRRNLGKTGEKLKS*RRPEKLEQHQPLLMKQ 458
           Y ++ AI    +K++ PRR+ G+T  K  S   P+   Q   + +KQ
Sbjct: 162 YEEYLAI--AKEKSLIPRRSRGRTSSKSLSPPAPQDESQGTEINLKQ 206


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +2

Query: 407 LEEARKAGTAPAAVDETGKDINPHIPQYIASAPWYYGTSGPTLKHQRPQEDREGQFTKLD 586
           L   +   T PAAVD+    I   + +     P Y   S  TL  +  +EDR   F   D
Sbjct: 478 LANKKARATKPAAVDDYSSFIGHKVDEIKLWPPIYRVVSPDTLLTRDYREDRLNFFIDKD 537

Query: 587 K 589
           +
Sbjct: 538 R 538


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 276 KILYRQWRRRLVYLYHKFYAIKMTPKKTMSPRRNLGKTGEKLKS*RRP 419
           K+L+  W+ ++ Y Y  F      P KT +  +NL    +++K+  RP
Sbjct: 6   KLLHPDWKEKVTYSYEFF------PPKTSTGVQNLYNRIDRMKTWGRP 47


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 647 CENCGAMTHKKKDC 688
           C+NCG + H++ DC
Sbjct: 311 CQNCGNVGHRRFDC 324


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 93  KIDTSNNLCLQFLMLK*FKNKKDRKDIVSCEPKN*CFRL*LFYHK 227
           K+D    L LQ+LM+  F ++  RK + +    N  FR   F HK
Sbjct: 213 KVDNPKGL-LQYLMMSLFPDQNLRKHLNTPNQANVDFRATCFCHK 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,417
Number of Sequences: 5004
Number of extensions: 45867
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)