Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7f03
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157...   134   6e-32
04_04_0154 - 23146445-23146535,23146689-23146795,23146933-231469...    30   2.0  

>08_01_0189 +
           1578935-1578950,1579227-1579390,1579493-1579605,
           1579850-1580399,1580514-1580813,1581093-1581133,
           1581359-1581606,1581983-1582086,1582177-1582323
          Length = 560

 Score =  134 bits (324), Expect = 6e-32
 Identities = 64/105 (60%), Positives = 78/105 (74%)
 Frame = +2

Query: 377 SREDWRKAKELEEARKAGTAPAAVDETGKDINPHIPQYIASAPWYYGTSGPTLKHQRPQE 556
           SRED RK  ELEEARKAG APA VDE GK+INPHIPQY++SAPWY     P+LKHQR  +
Sbjct: 10  SREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKPSLKHQRNWK 69

Query: 557 DREGQFTKLDKYYNKGVDVTKVATKFRKGACENCGAMTHKKKDCL 691
             +  +TK   +Y++G  + + A K+RKGACENCGAMTH KK C+
Sbjct: 70  S-DPNYTK--SWYDRGAKLFQ-ANKYRKGACENCGAMTHDKKSCM 110


>04_04_0154 -
           23146445-23146535,23146689-23146795,23146933-23146993,
           23147070-23147221,23147306-23147383,23147696-23147809,
           23147880-23147956,23148128-23148194,23148341-23148406,
           23148528-23148651,23148733-23148825,23149446-23149594,
           23149681-23149761,23150502-23150644,23150758-23150872
          Length = 505

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/47 (23%), Positives = 27/47 (57%)
 Frame = -3

Query: 571 LSLSVLLRPLMFKSRSRSPIVPWSRCNILRYMRIYVFACFINSGWCC 431
           ++ S +++P+  +   +SP++ +   +I + +   +F CF N+G  C
Sbjct: 250 ITASQMVKPVSLELGGKSPLIVFDDVDIDKAVEWAMFGCFANAGQVC 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,752,238
Number of Sequences: 37544
Number of extensions: 264266
Number of successful extensions: 738
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)