Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7f03
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71181-6|CAA94899.1|  647|Caenorhabditis elegans Hypothetical pr...   142   2e-34
U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ...    27   9.6  
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel...    27   9.6  

>Z71181-6|CAA94899.1|  647|Caenorhabditis elegans Hypothetical
           protein K07C5.6 protein.
          Length = 647

 Score =  142 bits (344), Expect = 2e-34
 Identities = 63/105 (60%), Positives = 82/105 (78%), Gaps = 1/105 (0%)
 Frame = +2

Query: 377 SREDWRKAKELEEARKAGTAPAAVD-ETGKDINPHIPQYIASAPWYYGTSGPTLKHQRPQ 553
           S+ + ++ ++LEE RKAGTAPA VD +TG+DINPHIP +I+  PWY  + GPTLKHQRP 
Sbjct: 25  SKAEVQRDRQLEEDRKAGTAPAMVDVQTGRDINPHIPMFISQNPWYVPSEGPTLKHQRPH 84

Query: 554 EDREGQFTKLDKYYNKGVDVTKVATKFRKGACENCGAMTHKKKDC 688
           E+RE + T++ ++Y KG    K ATKFRKGACENCGAM H+K+DC
Sbjct: 85  EEREKKMTQIHEWYQKGT-TGKSATKFRKGACENCGAMGHQKRDC 128


>U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical
           protein F07E5.5 protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 641 GACENCGAMTHKKKDC 688
           G C  CGA TH ++DC
Sbjct: 307 GCCNVCGANTHLRRDC 322


>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
           helicase-4 protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 629 KFRKGACENCGAMTHKKKDC 688
           K  +G C NCG   H  KDC
Sbjct: 635 KVPRGPCRNCGQEGHFAKDC 654


>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
           helicase protein 4 protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 629 KFRKGACENCGAMTHKKKDC 688
           K  +G C NCG   H  KDC
Sbjct: 635 KVPRGPCRNCGQEGHFAKDC 654


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,514,840
Number of Sequences: 27780
Number of extensions: 261591
Number of successful extensions: 806
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)