Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7f01
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U56961-6|AAK39299.1|  497|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical protein
            F40F4.6 protein.
          Length = 2214

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 624  TVPIMLRAGARHPDAAECRSP 686
            TVPI +  G R+PD A C  P
Sbjct: 1501 TVPICVNGGTRNPDEATCSCP 1521


>U56961-6|AAK39299.1|  497|Caenorhabditis elegans Hypothetical
           protein T19D7.1 protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -3

Query: 324 YSYLYKLKMMHGFDF*MILCKKNFQQN---FIRRRKLASCSRRSGNVA*IFTK 175
           YSY  K+     FD     C+K   +N   F++ RK+ S SR    +A I+ K
Sbjct: 144 YSYFQKIFQYRKFDNSKSSCQKKLLKNWKIFLKIRKMLSLSRNVYIIATIYVK 196


>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical
           protein F48C1.1 protein.
          Length = 1064

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +1

Query: 10  LVRSYVRHLLSYFASLNLTFFVVLTEYTYTFIYNLIKHH*RASVKKFLNLRSLFKFSENL 189
           L  S  R +L    ++++ FF +L  +   +   L +H+    + + +N+RS  K + NL
Sbjct: 22  LALSAKRKVLLNPKTVSIYFFAILFTFLLAYHQRLGQHNNELHISRVVNMRSFVKEANNL 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,384,970
Number of Sequences: 27780
Number of extensions: 253846
Number of successful extensions: 658
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)