Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7e22
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr 1...    28   0.90 
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    26   4.8  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   6.3  

>SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 95

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 317 SSEGVLVDDQTVQDLGRQTNIPHCNFQMHCC 225
           + EG LV D+   ++G+    P C F   CC
Sbjct: 64  TEEGFLVYDEEELNIGQGGGTPDCPFDCQCC 94


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 104 SIMSIPFYKMNSREEYEMNED 166
           SI S P  K  SRE++E NED
Sbjct: 366 SIRSSPKSKKRSREDFEENED 386


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -2

Query: 571 KRDIPKE--SQFKSTNTTVLRLYFVQYFSRNVFQTVLCKSTTH*ISFNSLHSVRSSHSRA 398
           K+ + K+  S+ K   T+ LR + V  FSR+  +T  C S+    + N  H   S+    
Sbjct: 212 KKTLSKQPVSEHKEKQTSFLRRFRVPGFSRDKDKTKDCPSS----NSNPFHLASSNVKTL 267

Query: 397 IRTKSSSEWV 368
             +    EWV
Sbjct: 268 DASLDQGEWV 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,498
Number of Sequences: 5004
Number of extensions: 54324
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)