Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7e22
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114...    31   0.53 
05_04_0342 - 20425141-20425311,20425415-20425558,20426506-204266...    29   3.7  
04_04_1275 + 32321161-32321285,32321849-32322071,32322187-323223...    29   3.7  
01_06_1593 + 38502884-38502993,38503580-38503665,38504352-385044...    28   6.5  
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903...    27   8.6  

>07_01_0162 +
           1138420-1138640,1138788-1138830,1139449-1140971,
           1141770-1142063,1142145-1142337,1142624-1142694,
           1142781-1144200
          Length = 1254

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -2

Query: 436 NSLHSV--RSSHSRAIRTKSSSEWVLIG*RPKHWSWS-WSKHEVRRGSWWMI 290
           +S H V  RS H  A     +    + G RP HW  S   +   RRG WW++
Sbjct: 520 SSAHEVFWRSCHGVAYLCMENVVTEMAGCRPTHWPRSALVRQRRRRGGWWLV 571


>05_04_0342 -
           20425141-20425311,20425415-20425558,20426506-20426622,
           20426719-20426835,20427533-20427678,20428208-20428293,
           20428780-20428889
          Length = 296

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 362 NQNPFGRGFGPDGPAMRRPNRVERVKRYLMRCGLTKDSLK 481
           N N  GR  GP G +++R     + + Y+   G  KDS+K
Sbjct: 153 NYNFVGRLLGPRGNSLKRVEATTQCRVYIRGRGSVKDSVK 192


>04_04_1275 +
           32321161-32321285,32321849-32322071,32322187-32322309,
           32322391-32322519,32322939-32323024,32323233-32323356,
           32323531-32323579,32323808-32323890,32323975-32324042,
           32324187-32324264,32324460-32324547,32324640-32324756,
           32324844-32325176
          Length = 541

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -1

Query: 182 LQSSHNLHSFHILHGCSFCRTE-YS*C*NRYWNVYELFQSIQRYYRFFS 39
           L+  H+LH+FH + G      E Y      +WN + +    Q  Y F S
Sbjct: 250 LELPHSLHAFHRVSGSDSLNMEGYHTYRGGFWNYFSMGMDAQVSYEFHS 298


>01_06_1593 +
           38502884-38502993,38503580-38503665,38504352-38504497,
           38504817-38504933,38505028-38505144,38505858-38506001,
           38506099-38506251
          Length = 290

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 362 NQNPFGRGFGPDGPAMRRPNRVERVKRYLMRCGLTKDSLK 481
           N N  GR  GP G +++R     + + Y+   G  KDS+K
Sbjct: 153 NYNFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVK 192


>02_04_0157 + 20388761-20388763,20389807-20389935,20390206-20390349,
            20390690-20390835,20390915-20391071,20391312-20391370,
            20391466-20391664,20392232-20392381,20392471-20392607,
            20392717-20392863,20392975-20393076,20395655-20395712,
            20395816-20395917,20396236-20396273,20396409-20396535,
            20397092-20397259,20397356-20397487,20400222-20400331,
            20400400-20400460,20400929-20401106,20401194-20401399,
            20401552-20401671,20402523-20402621,20404177-20404386,
            20404704-20404843,20404945-20405053,20405351-20405431,
            20405523-20405693,20405825-20405974,20407029-20407202,
            20407453-20407479,20407688-20407758,20407843-20407942,
            20408305-20408361,20409457-20409513,20409656-20409736,
            20410336-20410421,20410535-20410649
          Length = 1466

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 177  LKSHLDFREER*GITNTAMHLEITMGDIGLTTKVLDRLIIHQDPLRT 317
            LK   D   +  G+TNT + L+  + ++ L  +VL +  + + P+RT
Sbjct: 1022 LKKATDAESKINGLTNTMLSLQEKLTNMELENQVLRQQALFRSPVRT 1068


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,134,654
Number of Sequences: 37544
Number of extensions: 328697
Number of successful extensions: 823
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)