Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7e22
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    33   0.15 
U10438-13|ABB88243.1|  235|Caenorhabditis elegans Hypothetical p...    29   1.9  

>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
            protein Y26D4A.9 protein.
          Length = 1435

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +2

Query: 404  AMRRPNRVERVKRYLMRCGLTKDSLKNIPREILHKIEPEYCGVCALEL-GLF-WNVSFAL 577
            AM R +R     R+L +C   ++SLKN   EIL   E E   +  L+   L+ W +S  L
Sbjct: 980  AMLRYSRANN--RHLKKCNTEEESLKNYEEEILKNYEEESIYLLYLDANNLYGWAMSQKL 1037

Query: 578  PFKN 589
            P+ N
Sbjct: 1038 PYDN 1041


>U10438-13|ABB88243.1|  235|Caenorhabditis elegans Hypothetical
           protein B0280.17 protein.
          Length = 235

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 362 NQNPFGRGFGPDGPAMRRPNRVERVKRYLMRCGLTKDSLK 481
           N NP GR  GP G  +R+  +    K ++   G TKD  K
Sbjct: 127 NTNPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAK 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,289,558
Number of Sequences: 27780
Number of extensions: 298487
Number of successful extensions: 756
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)