Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7e22
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   0.98 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   1.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   4.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.2  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 125 YKMNSREEYEMNEDCGWTEEPPRLPRRK-IRNN-EYSNAFGNYNGGY 259
           Y+  S+E      +   ++EP  +     + NN  Y+N + NYN  Y
Sbjct: 59  YRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNNNY 105



 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 215 NNEYSNAFGNYNGGY 259
           NN Y+N   NYN  Y
Sbjct: 95  NNNYNNYNNNYNTNY 109


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 215 NNEYSNAFGNYNGGYWSD 268
           NN Y+N + NYN   +++
Sbjct: 331 NNNYNNNYNNYNNNNYNN 348


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 523 VLRLYFVQYFSRNVFQTVLCKSTTH*ISFNSLHSVRSSHSRAIRTKSSS 377
           VL+L+ V ++   V++  LC  T        LH    S S  + +   S
Sbjct: 246 VLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPRDS 294


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 170 HNLHSFHILHGCS 132
           H LH  H LHG S
Sbjct: 135 HGLHGLHGLHGLS 147


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 318  SCLDQDQDQCLGLYPIKTHSEEDLVRMALLCE 413
            +C D D+++    Y   + ++ED V  +L  E
Sbjct: 1056 ACFDSDRERLYDCYVCYSPNDEDFVLHSLAVE 1087


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 543 NWDSFGMSRLHYLSKIM 593
           NWD   ++   YL+K++
Sbjct: 14  NWDLKNLTEAEYLAKVL 30


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 574 CKRDIPKESQFKSTNTTVLRLYFVQYFSRNVFQTVL 467
           C  D+  +    STN   + LY+    + +VF  +L
Sbjct: 297 CMSDLHWQLPHNSTNPPNILLYYRDSLALSVFALIL 332


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 548 PIQEHKHHSTQAL 510
           P   H HH TQ+L
Sbjct: 349 PPHHHHHHQTQSL 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,046
Number of Sequences: 438
Number of extensions: 4049
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)