Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7e21
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0338 + 7426999-7428322,7428390-7428646                           28   5.3  
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     27   7.0  
05_03_0618 - 16262826-16263097,16263111-16263183                       27   7.0  
09_04_0269 + 16265191-16265472,16265574-16266149                       27   9.2  

>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -2

Query: 272 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 132
           LM      C  L HR P L +  L A        L+AI   KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443


>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
 Frame = +1

Query: 307 SGRKHSRCCTSILRKFSGR------QHCVTVDCCC 393
           +G+K  RCC S  R+ + R      + C+   CCC
Sbjct: 24  AGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 157 RIARREQKLKEHGASSCISGKRGRRC 234
           R+ARR + LK   +  C  G R RRC
Sbjct: 11  RMARRRRWLKRRRSGHCRCGLRSRRC 36


>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 269 MESTDPQCHILQHRRPRLPL 210
           M  T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,402,498
Number of Sequences: 37544
Number of extensions: 234460
Number of successful extensions: 502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)