Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7e18
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.4  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   1.9  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   4.4  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   4.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.7  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 200 KQCGHERT*AEMKYNKQNGLNGNWHSVKSANRHDNRQ 310
           KQ G+ +       NKQNG   N +      ++DN+Q
Sbjct: 454 KQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQ 490



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 200 KQCGHERT*AEMKYNKQNGLNGNWHSVKSANRHDNRQPQ 316
           KQ G+ +   +   NKQNG   N +      ++DN+  Q
Sbjct: 489 KQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQ 527



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 200 KQCGHERT*AEMKYNKQNGLNGNWHSVKSANRHDNRQ 310
           KQ G+ +   +   N+QNG   N +      ++DN++
Sbjct: 479 KQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKR 515


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 475 EDFYKQDTGKQPINCHIK 422
           +DFY+QDT    +N +++
Sbjct: 46  KDFYRQDTKNNLLNAYVR 63


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 439 INCHIKND--CRYLDKVDLDKISQKGRL 362
           I C I  D   +Y D +D+D+I Q GR+
Sbjct: 13  ITCVIAEDYTTKY-DDMDIDRILQNGRI 39


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 439 INCHIKND--CRYLDKVDLDKISQKGRL 362
           I C I  D   +Y D +D+D+I Q GR+
Sbjct: 13  ITCVIAEDYTTKY-DDMDIDRILQNGRI 39


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 475 EDFYKQDTGKQPINCHIKNDCRYLDKVDLDKISQKG 368
           E+FY+   G    NC IK       ++D ++++ +G
Sbjct: 455 EEFYQSQYGDPINNCEIK-----AGEIDAERLNNQG 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,281
Number of Sequences: 438
Number of extensions: 3729
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)