Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7e17
         (357 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-6|CAE17680.1|   55|Caenorhabditis elegans Hypothetical pr...    28   1.7  
AF002198-7|AAF99935.1|  693|Caenorhabditis elegans Hypothetical ...    26   6.7  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    26   8.9  

>Z73103-6|CAE17680.1|   55|Caenorhabditis elegans Hypothetical
           protein C08F8.9 protein.
          Length = 55

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 228 LEAIHNDPFNWNLFKSLTFFFLGL 299
           +  ++NDPF W++FK +  F +G+
Sbjct: 18  VNTVYNDPFFWSVFKGVIGFGVGV 41


>AF002198-7|AAF99935.1|  693|Caenorhabditis elegans Hypothetical
           protein F35F10.10 protein.
          Length = 693

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +3

Query: 201 GGLFE-CLQHLEAIHNDPFNWNL-FKSLTF--FFLGLKLFHDMARN 326
           GGL E C   LE   + P N +L F+   F  FF+G+K+ ++M  N
Sbjct: 224 GGLAEFCPNSLENCMDIPSNGSLQFEKPPFDKFFIGIKMLNNMTTN 269


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 126  IEYRLSFTSPLTTDLC*IRFNGLCEGGLFECLQHLEAIHNDPFNWNLF 269
            +   L  T P+   +C    NG+ E  L   L+  E IH + F+  LF
Sbjct: 6172 VSSELEETKPVRFTVCDGSLNGISEPVLVYLLRKSEDIHKNYFDVELF 6219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,151,506
Number of Sequences: 27780
Number of extensions: 99899
Number of successful extensions: 242
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)