Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7e16
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.8  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   3.7  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    26   4.9  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   8.5  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    25   8.5  

>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 383 YDKIYYQRY*NNFFFCLGFDWERRNYKHILIKSIYAKTRTEESRKN 520
           YD     R     F+   FD + R  + + +K I+AK  T++ RKN
Sbjct: 212 YDSTKEVRNKGTAFYQFSFDEKEREEQLLSLKEIHAKV-TQQQRKN 256


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 297 YDFWIFFCDSLQQLEIRGLMSHVNDSKCFTTKFT 398
           Y  W FF  S     I+ LMSH   SK  +  F+
Sbjct: 261 YFLWFFFFFSFPSYIIKYLMSHSRRSKLLSAVFS 294


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 67  IQDFFLNI*ECSVKCWGARMSDKLKTQDID 156
           + D+++ I +C    W AR S  L  ++ID
Sbjct: 139 VSDYYITIQDCVYGLWRARESSILNIRNID 168


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 361 MSMIPNVLRQNLLSTLLKQFF 423
           ++++P VLR +LLS LL   F
Sbjct: 765 LAVVPQVLRSHLLSHLLNNLF 785


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 9   SLSVLHSKMERAVFK*YLEHSGFLFKYLRVQRKVLGGANVGQIK 140
           S ++  S + +   K  L+ + FL KYLR+ ++ L   N G  K
Sbjct: 312 SYAMPSSALAKPAQKMVLDQADFLMKYLRIPKEGLYYRNFGLYK 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,266
Number of Sequences: 5004
Number of extensions: 36057
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)