Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7e16
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116...    31   0.70 
01_06_0216 + 27618116-27618548,27618960-27619042,27619169-276192...    28   5.0  

>12_01_0151 -
           1158834-1159703,1159917-1160092,1160144-1162097,
           1162360-1162620,1162729-1162916,1164127-1164166
          Length = 1162

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 391 NLLSTLLKQFFFLSWIRLGKAKLQTYPNKIDLCKN 495
           NLL  L+ +F +LS+ R+  A  + +P +I  C N
Sbjct: 481 NLLLPLIPKFEYLSYFRISHASCRAFPEEISHCWN 515


>01_06_0216 +
           27618116-27618548,27618960-27619042,27619169-27619225,
           27619255-27619407,27619777-27619872,27620103-27620183,
           27620184-27620254,27620343-27620385,27620502-27620582,
           27620684-27620743,27621018-27621083,27621358-27621455,
           27621794-27621842,27621933-27621977,27622845-27623369
          Length = 646

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 367 MIPNVLRQNLLSTLLKQFFFLSWIRLGKAKL 459
           +I N +  +LL  L+  FFFLSW  + KA++
Sbjct: 278 VIVNQVDSSLLIFLVDHFFFLSWQVIAKARV 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,303,289
Number of Sequences: 37544
Number of extensions: 196687
Number of successful extensions: 385
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)