Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7e13
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1096 + 30855192-30855225,30856135-30856208,30856293-308564...    31   0.69 
08_02_0086 - 12133709-12133781,12133860-12134011,12134501-121345...    28   6.4  
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    28   6.4  
01_07_0235 + 42198662-42199615,42200129-42200746                       28   6.4  

>04_04_1096 +
           30855192-30855225,30856135-30856208,30856293-30856467,
           30856842-30856918,30857042-30857279,30857414-30857478,
           30857628-30858086,30858253-30858465,30858613-30859002
          Length = 574

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 288 WLQNPRYYRPSPGYLYLEDWTKNPFTWLHY--VESSDGLLVEDEVLLNAYSRYWSIHDVQ 461
           ++  P  Y P P  ++   +  +   W  Y  V S+DG      V+ ++YS   ++ D Q
Sbjct: 77  FIYQPNVYTPQPHTVFSGGYLNHLGQWEEYPHVASADGTDAASPVMYSSYSPVPTMGDSQ 136

Query: 462 RYFLGDLHC 488
            Y+   LHC
Sbjct: 137 PYY--PLHC 143


>08_02_0086 -
           12133709-12133781,12133860-12134011,12134501-12134573,
           12134665-12134810,12135029-12135108,12136071-12136245
          Length = 232

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 246 CKFVKLIGHLDAVK--WLQNPRYYRPSPGYLYLEDWTKNPFTWLHYVESSDGLLVEDEVL 419
           CK+V  I   ++++  W+++ + Y  S     L+D    P   LHYV     + V  ++ 
Sbjct: 121 CKYVMSIDCAESLQKEWIRSMKPYPISLSLRNLQDILDGPHPTLHYVHKIANIAVNVKLA 180

Query: 420 LNAYSRYWS 446
           +   +  W+
Sbjct: 181 MEGTNPTWN 189


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -3

Query: 630 KLLPGID*ILSNIILAKPSLLCSFSTKCFPSDWATSNLDIDE 505
           ++ PGI+  ++NI L   SLL  F  K  P + A+ +LD+ E
Sbjct: 125 RICPGINLGIANIELPLASLLYHFDWK-LPDEMASKDLDMQE 165


>01_07_0235 + 42198662-42199615,42200129-42200746
          Length = 523

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -3

Query: 630 KLLPGID*ILSNIILAKPSLLCSFSTKCFPSDWATSNLDIDE 505
           ++ PG+   LSNI +A  SLL  F  K  P+D ++  LD+ E
Sbjct: 462 RMCPGLTFGLSNIEIALASLLYHFDWK-LPNDASSCKLDMRE 502


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,234,564
Number of Sequences: 37544
Number of extensions: 310892
Number of successful extensions: 573
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)