Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7e12
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 33 0.040
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 29 0.49
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 1.1
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 28 1.5
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp... 27 3.5
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha... 26 6.0
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 6.0
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 8.0
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 33.1 bits (72), Expect = 0.040
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 356 KPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQ 487
K PT PP P PTP++ LI TP PG++ F SQ
Sbjct: 154 KTSEPT-PPFSYVQTPCIPTPSSALIDTPFPGALDSEFGFDESQ 196
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 29.5 bits (63), Expect = 0.49
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 362 VHPTLPPNQIKPVPVYPTPATRLITTPGPGS 454
++P P ++KP PTPA + T+P P S
Sbjct: 314 INPKRRPIEVKPAAPVPTPAPPVKTSPHPAS 344
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +2
Query: 47 DLEKKAVTALVFRQHL---RECLVNMKIIGIVLLLVFYGSECRK 169
DLEK AL+ L + CL KI + L F G ECRK
Sbjct: 553 DLEKNITEALLTGDVLSAVKACLEEKKISEALFLSTFGGKECRK 596
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +2
Query: 332 TALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQG 490
T LT P + T P P YPT T T PGSV +T S G
Sbjct: 252 TTLTTTVPHSGNETGPTTVYVETP-YPTTVTTTTTVGYPGSVTTTLTGAPSNG 303
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +2
Query: 332 TALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQG 490
T LT P + T P P YPT T T PGSV +T S G
Sbjct: 330 TTLTTTVPHSGNETGPTTVYVETP-YPTTVTTTTTVGYPGSVTTTLTGAPSNG 381
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +2
Query: 332 TALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQG 490
T LT P + T P P YPT T T PGSV +T S G
Sbjct: 408 TTLTTTVPHSGNETGPTTVYVETP-YPTTVTTTTTVGYPGSVTTTLTGAPSNG 459
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +2
Query: 332 TALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQG 490
T LT P + T P P YPT T T PGSV +T S G
Sbjct: 486 TTLTTTVPHSGNETGPTTVYVETP-YPTTVTTTTTVGYPGSVTTTLTGAPSNG 537
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +2
Query: 332 TALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQG 490
T LT P + T P P YPT T T PGSV +T S G
Sbjct: 564 TTLTTTVPHSGNETGPTTVYVETP-YPTTVTTTTTVGYPGSVTTTLTGAPSNG 615
>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 473 FYNSQGKGSVIKPYSYSDAVKQG*TFNENIKDLICLLRKYC 595
+Y + + V+K + + VK N + KD +C++ YC
Sbjct: 115 YYYIRKELDVLKVLDHENVVKLYQVINSDYKDSLCMVLNYC 155
>SPBC14F5.12c |cbh2||centromere binding protein
Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 355 RSYRR*SCH-DRFDLSWRHGCRSRLDNRRLCEWL 257
R++R+ + H D D WR+ +R+ + EWL
Sbjct: 236 RAFRQANAHPDSMDFHWRYNGTARMTTSIMEEWL 269
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 176 KPIDKNANIDFINMEAGGARP 238
K + KN+ I F++ E GG +P
Sbjct: 182 KSVKKNSEIKFVSEERGGTKP 202
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 335 ALTPVAPKPVHPTLPP 382
+LTP++ +P H +LPP
Sbjct: 360 SLTPLSSRPAHTSLPP 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,048
Number of Sequences: 5004
Number of extensions: 53305
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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