Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7e05
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    29   0.92 
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    28   1.6  
SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces pombe...    27   3.7  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   4.9  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    26   4.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.5  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   6.5  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   6.5  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   6.5  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   6.5  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   8.6  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   8.6  

>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 13/57 (22%), Positives = 30/57 (52%)
 Frame = +3

Query: 441 LVDTRDGHIKKIKGSGEVPEYCLRPDFGRVPEYLVRRNRKIQKALEEIRLADQNKES 611
           L D    +  K   S ++P++ L  D     + +   + ++++ LEEIR  +Q++++
Sbjct: 70  LEDNEKSNDNKSNTSSKIPDWVLEQDLKIQKDLVKETHARLEQRLEEIRKRNQSRKN 126


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 600 NKESLCKLISEEERQKLLKDLKNNWELMQKAFL-QLPMLTD 719
           +K   C L +EEER ++L+ L N + +   A L +L  LTD
Sbjct: 766 DKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLSTLTD 806


>SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 193

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 564 QKALEEIRLADQNKESLCKLISEEERQKLLKDL--KNNWELMQKAFLQLPM 710
           QK+L    +   N  S   + ++ E ++L KDL  K  WEL      Q+PM
Sbjct: 39  QKSLVSKNIHSGNSASSTSIFAKRE-EELQKDLLLKKAWELAYSPLKQIPM 88


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +3

Query: 612 LCKLISEEERQKLLKDLKNNWELMQKAFLQLPML 713
           LC+L + E +++L  ++  N  L+QK FL++ +L
Sbjct: 110 LCRLANLEMQKELSIEVNMNVTLVQKQFLEMVIL 143


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = +3

Query: 597 QNKESLCKLIS---EEERQKLLKDLKNNWELMQK 689
           QN+ +  KLIS   EEERQ++L++ +    L QK
Sbjct: 215 QNRRAKSKLISRRQEEERQRILREQRELDSLNQK 248


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -1

Query: 729 SVSYRSASATEETLFASAPSCSSNPSTASAVPPR**ACTSSPCS 598
           S S  S+S++  ++ +S+ S SS+P++ S+      + +SSP S
Sbjct: 259 SSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTS 302


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -2

Query: 605 LVLISEPDLFESLLDFSVTPY*I-FWNSTKIRSEAILGDFA*TLNFLDVPISRVN*PWLH 429
           L  + +   F SL    V PY    WN   I S    G     L+++D P+S +  PWL+
Sbjct: 403 LSTLDQGSAFPSLAKNPVNPYSKDTWNLNVIASTN--GSL---LSYIDNPVSGITCPWLY 457

Query: 428 RFGFSFYSF 402
             G  F +F
Sbjct: 458 -VGMCFSTF 465


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +3

Query: 387 ILNIKKAIKTKAKPVEPRLVDTRDGHIKKIKGSGEVPEYCLRPDFGRVPEYLVRRNRKIQ 566
           +L + KAI      ++P+L    + ++K IK S E         F    E  + + +KI 
Sbjct: 51  LLKLTKAITEYLSNLKPQLSKQENIYVKHIKSSNEAKTEL--EIFNCYKEISISKEKKIN 108

Query: 567 KALEEIRLADQN 602
             L+ +R + Q+
Sbjct: 109 SLLKLVRESAQD 120


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
 Frame = +3

Query: 384 KILNIKKAIKTKAKPVEPRLVDTRDGHIKKIKGSGEVPEYCLRPDFGRVPEYLVRRNRKI 563
           ++L + + +  K K  E    D     IK      +     LR +  R+ + LV  N+ +
Sbjct: 209 QLLTVTEKLDKKEKDYEKIKEDVSS--IKASLAEEQASNKSLRGEQERLEKLLVSSNKTV 266

Query: 564 QKALE-EIRLADQNK---ESLCKLISEEERQKLLKDLKNN 671
               + E  L  + K   E L K    EE  KLL++LK+N
Sbjct: 267 STLRQTENSLRAECKTLQEKLEKCAINEEDSKLLEELKHN 306


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 293 HRSPVRRWQSSSRAEKTATREKRGETAEEL 382
           +  P  RW+SSSR +KT T   +    + L
Sbjct: 613 YSQPPPRWESSSRDDKTNTSSTQPSQVDSL 642


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 554 VTPY*IFWNSTKIRSEAILGDF 489
           + PY  FW++ ++  E I GD+
Sbjct: 585 IKPYTEFWDNERVEREIIAGDY 606


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +3

Query: 564 QKALEEIRLADQNKESLCKLISEEERQKLLKDLKNNWELMQKA 692
           +++ EE++ A +      K   E+ER   L++ K N++++QK+
Sbjct: 39  KRSPEELKQAIEALREKAKEKKEKERILALEEKKTNYKILQKS 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,625
Number of Sequences: 5004
Number of extensions: 47171
Number of successful extensions: 164
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)