Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7e05
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0057 - 12953479-12954364,12954484-12955034,12955125-129553... 34 0.14
11_01_0036 + 268028-268168,268734-268839,268920-269031,269126-26... 31 1.3
11_06_0299 - 22086964-22087002,22087878-22087978,22088079-220888... 30 1.7
02_02_0270 + 8431503-8431830,8431961-8432149,8434288-8434412,843... 30 1.7
01_06_0161 + 27108920-27109279,27109479-27109598,27110301-271104... 29 3.9
03_03_0136 - 14757965-14758579 29 5.2
12_02_0211 + 15694061-15694457,15694497-15695452 28 6.8
08_01_0718 - 6365506-6366047,6381623-6381937,6382857-6383082,638... 28 9.0
07_01_1195 - 11358495-11359079,11359940-11360017 28 9.0
06_03_0559 + 22148773-22149210,22149478-22149684,22150065-221504... 28 9.0
>11_04_0057 -
12953479-12954364,12954484-12955034,12955125-12955342,
12957514-12957678,12960562-12960898
Length = 718
Score = 33.9 bits (74), Expect = 0.14
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -3
Query: 568 FWIFLLRLTKYSGTRPKSGLRQYSGTSPEPL-IFLMCPSLVSTSRGSTGLALVFIAF 401
F +FL L T P GL TSP PL +F++C SL S G++G+ +AF
Sbjct: 243 FMLFLTSLIPKL-TPPDCGLSNQGCTSPSPLQLFVLCASLGFMSLGASGVRPCCLAF 298
>11_01_0036 +
268028-268168,268734-268839,268920-269031,269126-269241,
269321-269399,269476-269614,269689-269747,269924-270218,
270303-270362,270502-270933
Length = 512
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +3
Query: 495 PEYCLRPDFGRVPEYLVRRNRKIQKALEEIRLADQNKESLCKLISEEERQKLLKD 659
P Y ++ F VP+Y++ + I KA EE L D + +++ K E ++Q+ L+D
Sbjct: 324 PNYVVKRTF--VPDYMLEKQYLINKAEEE--LMDDDVDNILKQDRETDQQQELED 374
>11_06_0299 -
22086964-22087002,22087878-22087978,22088079-22088826,
22089201-22089373,22089403-22089676,22089761-22090069
Length = 547
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/78 (32%), Positives = 34/78 (43%)
Frame = -2
Query: 536 FWNSTKIRSEAILGDFA*TLNFLDVPISRVN*PWLHRFGFSFYSFLNIQNFEVLLRFLLF 357
FW K AI G + LD IS H G++ + L I NF+ +RF+
Sbjct: 420 FWPYFKDAIGAIDGSHISVVVLLDETISHT----CHH-GYTSQNVLAIYNFD--MRFIFA 472
Query: 356 FPGWRSSRHGRKIATDAL 303
GW S H +I + AL
Sbjct: 473 VAGWPGSAHDSRILSHAL 490
>02_02_0270 +
8431503-8431830,8431961-8432149,8434288-8434412,
8434527-8434703,8434798-8434871,8434978-8435713
Length = 542
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +3
Query: 516 DFGRVPEYLVRRNRKIQKALEEIRLADQNKESLCKLISE-----EERQKLLKDLKNNWEL 680
+ R+ L N K+ K EE+ A+ N ESL LI E +E QK L + K+ E
Sbjct: 366 EVNRLIAELTATNEKLSKLKEELTTANTNNESLRLLIKENSEMHQEGQKALAEEKSKREA 425
Query: 681 M 683
+
Sbjct: 426 L 426
>01_06_0161 +
27108920-27109279,27109479-27109598,27110301-27110438,
27110680-27110784,27110883-27111051,27111507-27111583,
27111796-27111840,27111984-27112022,27112374-27112457,
27112846-27112884,27112963-27113025,27113109-27113238,
27113319-27113374
Length = 474
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 468 KKIKGSGEVPEYCLRPDFGRVPEYLVRRNRK 560
K I G+G P+Y PDF EYL R K
Sbjct: 441 KDINGNGIEPDYRRIPDFNEATEYLSRCRSK 471
>03_03_0136 - 14757965-14758579
Length = 204
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Frame = +2
Query: 164 IRERVKRDKETEAPSYVRLC*DSG*ASRTIPQKGRRHWAAC--*MHRSPVRRWQSSSRAE 337
+RE + D + E S +C D G SR GRR C H V RW +
Sbjct: 71 LREVEEEDDDGEEASDCAICLDDGEESRETCGSGRRKEMPCGHRFHGECVERWLGIHGSC 130
Query: 338 KTATREKRGETAEELQNSE 394
E TA E + E
Sbjct: 131 PLCRHEMPPATAAEAEEEE 149
>12_02_0211 + 15694061-15694457,15694497-15695452
Length = 450
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 528 VPEYLVRRNRKIQKALEEIRLADQNKESLCKLISEEERQKLL-KDLKNNWELMQKAFLQ 701
V EYL NR + ALE++R ++ +E + +++E L+ + ++ +L+ KA Q
Sbjct: 53 VTEYLHDFNRLARYALEDVRTDEERQEKFLEGLNDELSYALMAMEYRDFQQLVDKAIRQ 111
>08_01_0718 -
6365506-6366047,6381623-6381937,6382857-6383082,
6383295-6383458,6383498-6383934,6384395-6384669
Length = 652
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 299 SPVRRWQSSSRAEKTATREKRGETAE 376
+P R W +SRA+ ATR+ G TA+
Sbjct: 96 APSRPWTRTSRAKSVATRDILGMTAQ 121
>07_01_1195 - 11358495-11359079,11359940-11360017
Length = 220
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 540 LVRRNRKIQKALEEIRLADQNKESLCKLISEEERQKLLK-DLKNNWELMQKAFLQLPMLT 716
L+R R +QKA E+ +NK +C+ + + K LK +K N+ L L +P T
Sbjct: 47 LMRNPRVMQKAQAEVHNIVKNKSKVCE--EDIQNMKYLKMIIKENFRLHPPGTLLIPRQT 104
>06_03_0559 +
22148773-22149210,22149478-22149684,22150065-22150471,
22150655-22151472,22151564-22151674,22151846-22152015
Length = 716
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -2
Query: 479 LNFLDVPISRVN*PWLHRFGFSFYSFLNIQNFEVLLRFLLFFPGWRSSRHGRKIATDAL 303
+N + I RV P+L+R + + L + +F+ +RF GW S H ++ DA+
Sbjct: 557 VNVVVPKIKRV--PYLNRHNETSQNVLAVCDFD--MRFTFVLSGWPGSAHDMRVFKDAV 611
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,139,785
Number of Sequences: 37544
Number of extensions: 320182
Number of successful extensions: 1028
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -