Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7e05
(744 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical pr... 31 0.65
Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical p... 31 0.86
Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical p... 31 0.86
AF067936-8|AAC19209.1| 213|Caenorhabditis elegans Synapsis in m... 31 0.86
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 29 2.6
Z70682-2|CAA94582.2| 151|Caenorhabditis elegans Hypothetical pr... 29 4.6
U41038-5|AAK29710.4| 519|Caenorhabditis elegans Hypothetical pr... 29 4.6
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 28 6.1
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 28 6.1
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 28 8.0
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 28 8.0
>U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical
protein F59A3.2a protein.
Length = 975
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +3
Query: 522 GRVPEYLVRRNRKIQKALEEIRLADQNKESLCKLISEEERQKLLKDLKNNWE 677
G +P+ V + + ++++ + KE + ++ SE++ LKDL+N WE
Sbjct: 652 GDLPKKWVNAYKLTLEWNQDLKSELEKKEKMSQVTSEDQDDLFLKDLQNGWE 703
>Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 31.1 bits (67), Expect = 0.86
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +3
Query: 507 LRPDFGRVPEYLVRRNRKIQKALEEIRLADQNKESLCKLISEEERQKLLKDLKNNWELMQ 686
+R D + +YL +N +++ +E+ LA E K+ E+ QK++ DLKN EL +
Sbjct: 282 IRDDIRKAKDYL-EQNLHVKQHMEK-ELAMVKSEQEEKISENEKVQKMVDDLKNKIELQK 339
Query: 687 K 689
+
Sbjct: 340 Q 340
>Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 31.1 bits (67), Expect = 0.86
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +3
Query: 507 LRPDFGRVPEYLVRRNRKIQKALEEIRLADQNKESLCKLISEEERQKLLKDLKNNWELMQ 686
+R D + +YL +N +++ +E+ LA E K+ E+ QK++ DLKN EL +
Sbjct: 282 IRDDIRKAKDYL-EQNLHVKQHMEK-ELAMVKSEQEEKISENEKVQKMVDDLKNKIELQK 339
Query: 687 K 689
+
Sbjct: 340 Q 340
>AF067936-8|AAC19209.1| 213|Caenorhabditis elegans Synapsis in
meiosis abnormal protein2 protein.
Length = 213
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 570 ALEEIRLADQNKESLCKLISEEERQKLLKDLKNNW 674
AL E +L+DQ ++ KLIS E + K L + NNW
Sbjct: 116 ALAESKLSDQMEKQSKKLISLEGKTKELVEKANNW 150
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 594 DQNKESLCKLISEEERQKLLKDLKNNWELMQKAFLQL-PMLTDTIPKILRK 743
+ N+ +L L++ E +KLL W L K+F L P D I + + K
Sbjct: 119 NDNQPTLGSLVTSESERKLLAKKSKQWNLKDKSFCALFPEEADQIREEMEK 169
>Z70682-2|CAA94582.2| 151|Caenorhabditis elegans Hypothetical
protein F08G5.3a protein.
Length = 151
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +3
Query: 513 PDFGRVPEYLVRRNRKIQKALEEIRLADQNKESLCKLISEEER----QKLLKDLKNNWEL 680
P+F YL +R ++K +R E + +L ++EE QKLL ++K +L
Sbjct: 2 PEFQERLTYLDKRYDHLRKMTHSLRKKVNELEDIMRLDNDEENMDTIQKLLDEIKREKQL 61
Query: 681 MQ 686
M+
Sbjct: 62 MR 63
>U41038-5|AAK29710.4| 519|Caenorhabditis elegans Hypothetical
protein F59C12.3 protein.
Length = 519
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/64 (25%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 534 EYLVRRNRKIQKALEEIRLADQNKESLCKLISEEERQ-KLLKDLKNNWELMQKAFLQLPM 710
E L +R +K ++ + AD+ ++ L ++ E+ R+ ++++ + WE M+K L++ +
Sbjct: 272 ERLAKREKKCEELSAVVAHADELRKQLNEVWEEQHRRDQMVESERAQWE-MEKTQLRMQL 330
Query: 711 LTDT 722
DT
Sbjct: 331 NKDT 334
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 28.3 bits (60), Expect = 6.1
Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Frame = +3
Query: 384 KILNIKKAIKTKAKPVEPRLVDTRDGHIKKIKGSGEVPEYC-----LRPDFGRVPEYLVR 548
K+L K + + + +E RLV+ +D + K +K + E D ++ V+
Sbjct: 967 KLLLDKTNVDQRLRNLEERLVELQDAYDKLLKEKRLLEEKVEGLTTQLLDHEERAKHGVK 1026
Query: 549 RNRKIQKALEEIRLADQNKESLCKLISEEERQKLLKDLKNNWELMQKAFLQLPMLTDTIP 728
+++ L E+ D N+E K E+ ++KLL +L+++ + + + ++ L + +
Sbjct: 1027 AKGRLENQLHELE-QDLNRERQYKSELEQHKRKLLAELEDSKDHLAEKMGKVEELNNQLM 1085
Query: 729 K 731
K
Sbjct: 1086 K 1086
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +3
Query: 534 EYLVRRNRKIQKALEEIRLADQNKESLC-----KLISEEERQKLLKDLKNNWELMQKAFL 698
E V RK + +EEI + + E + K + EE+ +K DL N W Q +
Sbjct: 93 EVFVEMERKYGE-VEEINVCENIGEHMVGNVYVKFMKEEDAEKAKNDLNNRWFNGQPIYA 151
Query: 699 QLPMLTD 719
+L +TD
Sbjct: 152 ELCPVTD 158
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 540 LVRRNRKIQKALEEIRLADQNKESLCKLISEEERQKLLKDL 662
L+++ ++K+L ++ L D+N + CKL +R+K LK L
Sbjct: 478 LLKKEEALRKSLADLPLLDENALTECKL----KREKYLKQL 514
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 540 LVRRNRKIQKALEEIRLADQNKESLCKLISEEERQKLLKDL 662
L+++ ++K+L ++ L D+N + CKL +R+K LK L
Sbjct: 464 LLKKEEALRKSLADLPLLDENALTECKL----KREKYLKQL 500
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 540 LVRRNRKIQKALEEIRLADQNKESLCKLISEEERQKLLKDL 662
L+++ ++K+L ++ L D+N + CKL +R+K LK L
Sbjct: 464 LLKKEEALRKSLADLPLLDENALTECKL----KREKYLKQL 500
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,558,255
Number of Sequences: 27780
Number of extensions: 266549
Number of successful extensions: 897
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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