Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7d22
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    31   0.066
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    31   0.12 
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    27   1.1  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    27   1.4  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    25   7.6  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   7.6  
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb...    25   7.6  

>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 31.5 bits (68), Expect = 0.066
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = -3

Query: 219 NLPIYLRSQCLRTFRLSPNSPAGTPQSPTPLPRLLVIVRERAFAFVRVILCSFKRKMFRI 40
           + P YL  +CLRT  L+ +S A        L  L    RE+AF+ V  +LC F +  F +
Sbjct: 233 SFPEYLSFRCLRTVALACSSYAANVLE-NALDNLNYEDREKAFSRVDELLCDFSQWPFDL 291

Query: 39  FST 31
            ++
Sbjct: 292 HAS 294


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 9/26 (34%), Positives = 20/26 (76%)
 Frame = +2

Query: 8   ENIRFHTSVENMRNIFRLNEHSITRT 85
           +++  H S++N+R +F+LN+H++  T
Sbjct: 764 QDVERHFSLDNLRQLFQLNDHTVCET 789


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 273 SIFVYKLFSISCKLTPSIIDV 335
           SIFVY +F+ISC L  +I+ +
Sbjct: 153 SIFVYTVFNISCALPRNIVQM 173


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 290 TIFHQLQAYTIHYRCASMFCN 352
           TI H L  YT+H++C+    N
Sbjct: 18  TIIHALPTYTVHWKCSIQQAN 38


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 234 W*RQHTSFY*NCMSIFVYKLFS 299
           W R+  SF  N +SI +YKLF+
Sbjct: 343 WKRKGYSFVINVLSIALYKLFT 364


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 177 RLSPNSPAGTPQSPTPLP 124
           + SP   A TPQ+P+PLP
Sbjct: 554 KTSPVKLAVTPQAPSPLP 571


>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 11  NIRFHTSVENMRNIFRLNEHSITRTKA 91
           N +  ++V+N++N    NEHS  R  A
Sbjct: 176 NTKNESTVQNIKNSLHPNEHSFIRDAA 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,360
Number of Sequences: 5004
Number of extensions: 39392
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)