Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7d22
(467 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0567 - 23914330-23914461,23915016-23915136,23915954-239160... 30 1.1
07_03_0244 - 15715047-15715163,15716672-15716824,15718629-157187... 29 2.5
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 27 7.5
09_06_0007 + 20155697-20156107 27 10.0
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 27 10.0
06_03_0139 + 17130980-17131594,17131740-17132009 27 10.0
03_05_1133 - 30614901-30615389,30615823-30615933,30616113-306161... 27 10.0
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 27 10.0
>02_04_0567 -
23914330-23914461,23915016-23915136,23915954-23916048,
23916131-23916301,23917291-23917380,23917636-23918139
Length = 370
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 222 FNLPIYLRS-QCLRTFRLSPNSPAGTPQSPTPLP 124
FNLP +LRS +C TF P P P P P P
Sbjct: 20 FNLPPWLRSLRCPFTFLCPPPPPPPPPPPPPPPP 53
>07_03_0244 -
15715047-15715163,15716672-15716824,15718629-15718748,
15718830-15719045,15719902-15719968,15720051-15720125,
15720607-15720698,15721053-15721154,15721642-15721711,
15721788-15721846,15721947-15722031,15722443-15722520,
15722627-15722725,15722819-15722910,15725572-15725661,
15725937-15725995,15727966-15728281,15728627-15728702,
15729998-15730308,15730577-15730634,15731082-15731092,
15731247-15731397,15733372-15733778
Length = 967
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 213 PIYLRSQCLRTFRLSPNSPAGTPQSPTPLPR 121
P +LR LR R + SPA P P+P PR
Sbjct: 10 PTFLREVELRLLRCTLPSPATLPPPPSPPPR 40
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 201 RSQCLRTFRLSPNSPAGTPQSPTPLP 124
RS+C R LSP +P+SP+ LP
Sbjct: 179 RSRCCRHRGLSPPPSRSSPRSPSSLP 204
>09_06_0007 + 20155697-20156107
Length = 136
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = -3
Query: 171 SPNSPAGTPQSPTP-LPRL 118
SP +PAG+P SP P +P+L
Sbjct: 113 SPPTPAGSPSSPAPAIPQL 131
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 186 RTFRLSPNSPAGTPQSPTPL 127
R LSP P P+SPTPL
Sbjct: 12 RPHHLSPGQPPVVPRSPTPL 31
>06_03_0139 + 17130980-17131594,17131740-17132009
Length = 294
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -2
Query: 154 GHTPIANTAAPASCYSTG 101
G+ P A T++P+SC+S+G
Sbjct: 129 GYGPTAATSSPSSCFSSG 146
>03_05_1133 -
30614901-30615389,30615823-30615933,30616113-30616178,
30616347-30616406,30616493-30616801,30616960-30617108,
30617200-30617269,30617370-30617494,30617516-30617573,
30618176-30618370,30618585-30618857,30618950-30619120,
30619203-30619333,30619423-30619582,30619712-30619900,
30620023-30620118,30620381-30620611,30620715-30620853,
30620903-30621057,30621160-30621378
Length = 1131
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 165 NSPAGTPQSPTPLPRLLVIVRERAFAFVRVILCS 64
+SP+ P+ P PL LLV R R F R CS
Sbjct: 18 SSPSRAPRPPVPLAALLVYHR-RLDVFARRSFCS 50
>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 204 LRSQCLRTFRLSPNSPAGTPQSPTPLP 124
+ S C R R+ P AGTPQ P
Sbjct: 994 VHSSCSRALRMGPKPFAGTPQGQRDAP 1020
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,833,565
Number of Sequences: 37544
Number of extensions: 238551
Number of successful extensions: 745
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -