Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7d20
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    27   3.3  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   4.4  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    26   4.4  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   4.4  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    25   7.6  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.6  

>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +2

Query: 251 FQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDINVIMAALQKKGCEAIWFDKRK 430
           F  RG  + + L+ I   L  N  I       GLG  ++ V + AL ++  ++ W+ K  
Sbjct: 244 FVRRGIVAGTSLEKIAENLMDNC-IASDTETTGLGCDNMTVCIVALLQENDKSAWYKKIA 302

Query: 431 D 433
           D
Sbjct: 303 D 303


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 489  ITSLVLLCCHYVVGIGSQLDRYR 557
            I++L+  CC Y+V +  +L+R R
Sbjct: 1040 ISALIDECCRYIVALSCELERRR 1062


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +2

Query: 245 NLFQTR---GTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDI-NVIMAALQKKGCEAI 412
           N+FQ     G F+  E + +      + W  PHRS +      + N I++ L+ + CE  
Sbjct: 404 NVFQDSILLGNFASQEGNVLKYENGQSCWNGPHRSAIVTVECGVENEIVSVLEAQKCE-- 461

Query: 413 WFDKRKDPGCLDLANICGFILN 478
           +  K K P       +   +LN
Sbjct: 462 YLIKMKSPAACSPDQLKQSLLN 483


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 285 SSDLENVPRVWNKLLSACK 229
           S D+ NVPR WNK+ +  K
Sbjct: 265 SHDISNVPRDWNKVTNYSK 283


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 221 LCALHALNNLFQTRGTFSKS 280
           L ALHALN++F+TR    K+
Sbjct: 219 LLALHALNHVFKTRDRVLKN 238


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +2

Query: 479 VPSDYKLGFVMLPLRRRHWITIRQI----QGNFYNLDSKLDS 592
           +P D  + FV L  + R+W+ +R I    + N Y LD ++ S
Sbjct: 305 LPKDAFIKFVQLLSKNRNWVLMRDIVQLEEYNSYLLDHRIVS 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,578
Number of Sequences: 5004
Number of extensions: 59298
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)