Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7d20
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0468 - 8712707-8713162,8713551-8713631,8713933-8714031           75   7e-14
06_03_0748 - 24126603-24128038,24128582-24128897                       30   1.5  
12_01_0523 + 4162673-4164427                                           30   2.0  
03_06_0618 - 35132077-35132830,35133690-35135212                       29   2.6  
01_06_1360 - 36650014-36650751,36652529-36652558,36652821-366529...    29   2.6  
01_06_0055 + 26030562-26032571                                         29   2.6  
03_06_0488 - 34281623-34283431                                         28   7.9  

>03_02_0468 - 8712707-8713162,8713551-8713631,8713933-8714031
          Length = 211

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 62/191 (32%), Positives = 86/191 (45%), Gaps = 40/191 (20%)
 Frame = +2

Query: 179 SAKPTIYHEKQIKELCALHALNNLFQTR-----------------------GT----FSK 277
           S    +YHE+Q  + C LHALNNL Q                         GT    F++
Sbjct: 8   SRSSKVYHERQRLQFCLLHALNNLMQENWNSVLSHLKATAYLSRSLSVLFVGTEKESFTR 67

Query: 278 SELDAICSRL---SPNV--W------INPHRSLLGLGNYDINVIMAALQKKGCEAIWFDK 424
           +ELD I   L    PN   W        PH ++   GNYD+NV++ AL+ +  + IW D 
Sbjct: 68  AELDGIAGNLVQIDPNKEHWTPMSLIFKPHHNVF-TGNYDVNVLITALEARKKKVIWHDH 126

Query: 425 RKDPGCLDL--ANICGFILNVPSDYKLGFVMLPLRRRHWITIRQIQGNFYNLDSKLDSPQ 598
           RK    +DL    + G ++NVP     G        RHW+ IR I G ++NLDS   +P+
Sbjct: 127 RKGASSIDLDADALFGLMINVPVRRFRGL----WTGRHWVAIRSINGTWFNLDSDFSAPK 182

Query: 599 LIGRSCDLIAY 631
                  LIA+
Sbjct: 183 EFQDKEKLIAF 193


>06_03_0748 - 24126603-24128038,24128582-24128897
          Length = 583

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 309 DRRLHIASSSDLENVPRVWNKLLSACKAH 223
           ++ L++  +   E+ P +W  LL AC+ H
Sbjct: 365 EKALNLIENMPFESTPSIWGSLLGACRVH 393


>12_01_0523 + 4162673-4164427
          Length = 584

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -3

Query: 339 DL*GFIQTFGDRRLHIASSSDLENVPRVWNKLLSACKAHNSF 214
           D+ G      D    I  S   E  P VW  +L ACK H +F
Sbjct: 355 DMYGRAGLLDDAMQFICDSIPEEPGPEVWTAMLGACKMHKNF 396


>03_06_0618 - 35132077-35132830,35133690-35135212
          Length = 758

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 339 DL*GFIQTFGDRRLHIASSSDLENVPRVWNKLLSACKAH 223
           DL G +    D    I SS   EN P +W+ LL AC+ H
Sbjct: 531 DLLGRVGKIADAEDFIMSSGS-ENDPILWHALLRACRVH 568


>01_06_1360 -
           36650014-36650751,36652529-36652558,36652821-36652919,
           36653664-36653936
          Length = 379

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 530 HWITIRQIQGNFYNLDSKLDSPQLIGR 610
           HW  IR++ G +YN +S   +P+ + +
Sbjct: 175 HWFCIRKVNGEWYNFNSLYPAPEHLSK 201



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 194 IYHEKQIKELCALHALNNLFQTRGTFSKSELDAI 295
           +YHE Q  +LCA+H +N   Q    FS+ +L A+
Sbjct: 13  LYHEVQEGKLCAVHCVNTTLQ-GPFFSEFDLSAL 45


>01_06_0055 + 26030562-26032571
          Length = 669

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 309 DRRLHIASSSDLENVPRVWNKLLSACKAHN 220
           D   H      +E  P +W  LL+AC+ H+
Sbjct: 578 DEAFHFIKKMPIEPNPVIWGSLLAACRVHH 607


>03_06_0488 - 34281623-34283431
          Length = 602

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 309 DRRLHIASSSDLENVPRVWNKLLSACKAH 223
           +R +    +  ++  P +W  L+SAC+AH
Sbjct: 384 ERAMEFVRTMPIQPNPVIWRSLVSACRAH 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,633,068
Number of Sequences: 37544
Number of extensions: 343498
Number of successful extensions: 730
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)