Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7d20
(677 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D31884-1|BAA06682.2| 211|Homo sapiens KIAA0063 protein. 185 1e-46
CR456473-1|CAG30359.1| 202|Homo sapiens dJ508I15.2 protein. 185 1e-46
BC015026-1|AAH15026.1| 202|Homo sapiens Josephin domain contain... 185 1e-46
AL021707-4|CAB42863.1| 202|Homo sapiens protein ( Human DNA seq... 185 1e-46
CR456923-1|CAG33204.1| 202|Homo sapiens KIAA0063 protein. 184 2e-46
BC062416-1|AAH62416.1| 188|Homo sapiens Josephin domain contain... 176 5e-44
BC051380-1|AAH51380.1| 208|Homo sapiens JOSD2 protein protein. 176 5e-44
AF247787-1|AAL95692.1| 188|Homo sapiens hypothetical transmembr... 176 5e-44
U64822-1|AAB63354.1| 373|Homo sapiens josephin MJD1 protein. 49 1e-05
U64821-1|AAB63353.1| 364|Homo sapiens josephin MJD1 protein. 49 1e-05
U64820-1|AAB63352.1| 361|Homo sapiens josephin MJD1 protein. 49 1e-05
S75313-1|AAB33571.1| 360|Homo sapiens MJD1 protein protein. 49 1e-05
EU009923-1|ABS29269.1| 361|Homo sapiens ataxin 3 protein. 49 1e-05
BC095402-1|AAH95402.1| 370|Homo sapiens ATXN3 protein protein. 49 1e-05
BC033711-1|AAH33711.1| 370|Homo sapiens ATXN3 protein protein. 49 1e-05
AB038653-2|BAB55646.1| 364|Homo sapiens ataxin-3 protein. 49 1e-05
AB038653-1|BAB55645.1| 361|Homo sapiens ataxin-3 protein. 49 1e-05
AB050195-1|BAB18799.1| 346|Homo sapiens protein ( Homo sapiens ... 40 0.011
AB050194-1|BAB18798.1| 306|Homo sapiens ataxin-3 protein. 33 1.2
>D31884-1|BAA06682.2| 211|Homo sapiens KIAA0063 protein.
Length = 211
Score = 185 bits (451), Expect = 1e-46
Identities = 84/149 (56%), Positives = 109/149 (73%), Gaps = 1/149 (0%)
Frame = +2
Query: 179 SAKPTIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHR-SLLGLG 355
+A P IYHEKQ +ELCALHALNN+FQ F++ L I RLSPN + PH+ S+LG G
Sbjct: 30 AAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMVTPHKKSMLGNG 89
Query: 356 NYDINVIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLRRRHW 535
NYD+NVIMAALQ KG EA+W+DKR+D G + L N+ GFI+N+PS G + LPL+R+HW
Sbjct: 90 NYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGPLKLPLKRQHW 149
Query: 536 ITIRQIQGNFYNLDSKLDSPQLIGRSCDL 622
I +R++ G +YNLDSKL P+ IG +L
Sbjct: 150 ICVREVGGAYYNLDSKLKMPEWIGGESEL 178
>CR456473-1|CAG30359.1| 202|Homo sapiens dJ508I15.2 protein.
Length = 202
Score = 185 bits (451), Expect = 1e-46
Identities = 84/149 (56%), Positives = 109/149 (73%), Gaps = 1/149 (0%)
Frame = +2
Query: 179 SAKPTIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHR-SLLGLG 355
+A P IYHEKQ +ELCALHALNN+FQ F++ L I RLSPN + PH+ S+LG G
Sbjct: 21 AAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMVTPHKKSMLGNG 80
Query: 356 NYDINVIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLRRRHW 535
NYD+NVIMAALQ KG EA+W+DKR+D G + L N+ GFI+N+PS G + LPL+R+HW
Sbjct: 81 NYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGPLKLPLKRQHW 140
Query: 536 ITIRQIQGNFYNLDSKLDSPQLIGRSCDL 622
I +R++ G +YNLDSKL P+ IG +L
Sbjct: 141 ICVREVGGAYYNLDSKLKMPEWIGGESEL 169
>BC015026-1|AAH15026.1| 202|Homo sapiens Josephin domain containing
1 protein.
Length = 202
Score = 185 bits (451), Expect = 1e-46
Identities = 84/149 (56%), Positives = 109/149 (73%), Gaps = 1/149 (0%)
Frame = +2
Query: 179 SAKPTIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHR-SLLGLG 355
+A P IYHEKQ +ELCALHALNN+FQ F++ L I RLSPN + PH+ S+LG G
Sbjct: 21 AAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMVTPHKKSMLGNG 80
Query: 356 NYDINVIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLRRRHW 535
NYD+NVIMAALQ KG EA+W+DKR+D G + L N+ GFI+N+PS G + LPL+R+HW
Sbjct: 81 NYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGPLKLPLKRQHW 140
Query: 536 ITIRQIQGNFYNLDSKLDSPQLIGRSCDL 622
I +R++ G +YNLDSKL P+ IG +L
Sbjct: 141 ICVREVGGAYYNLDSKLKMPEWIGGESEL 169
>AL021707-4|CAB42863.1| 202|Homo sapiens protein ( Human DNA
sequence from clone RP3-508I15 on chromosome 22q12-13.
).
Length = 202
Score = 185 bits (451), Expect = 1e-46
Identities = 84/149 (56%), Positives = 109/149 (73%), Gaps = 1/149 (0%)
Frame = +2
Query: 179 SAKPTIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHR-SLLGLG 355
+A P IYHEKQ +ELCALHALNN+FQ F++ L I RLSPN + PH+ S+LG G
Sbjct: 21 AAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMVTPHKKSMLGNG 80
Query: 356 NYDINVIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLRRRHW 535
NYD+NVIMAALQ KG EA+W+DKR+D G + L N+ GFI+N+PS G + LPL+R+HW
Sbjct: 81 NYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGPLKLPLKRQHW 140
Query: 536 ITIRQIQGNFYNLDSKLDSPQLIGRSCDL 622
I +R++ G +YNLDSKL P+ IG +L
Sbjct: 141 ICVREVGGAYYNLDSKLKMPEWIGGESEL 169
>CR456923-1|CAG33204.1| 202|Homo sapiens KIAA0063 protein.
Length = 202
Score = 184 bits (449), Expect = 2e-46
Identities = 84/149 (56%), Positives = 109/149 (73%), Gaps = 1/149 (0%)
Frame = +2
Query: 179 SAKPTIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHR-SLLGLG 355
+A P IYHEKQ +ELCALHALNN+FQ F++ L I RLSPN + PH+ S+LG G
Sbjct: 21 AAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMVTPHKKSMLGNG 80
Query: 356 NYDINVIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLRRRHW 535
NYD+NVIMAALQ KG EA+W+DKR+D G + L N+ GFI+N+PS G + LPL+R+HW
Sbjct: 81 NYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIMNLPSSLCWGPLKLPLKRQHW 140
Query: 536 ITIRQIQGNFYNLDSKLDSPQLIGRSCDL 622
I +R++ G +YNLDSKL P+ IG +L
Sbjct: 141 ICVREVGGAYYNLDSKLMMPEWIGGESEL 169
>BC062416-1|AAH62416.1| 188|Homo sapiens Josephin domain containing
2 protein.
Length = 188
Score = 176 bits (429), Expect = 5e-44
Identities = 79/140 (56%), Positives = 103/140 (73%)
Frame = +2
Query: 188 PTIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDI 367
PT+YHE+Q ELCA+HALNN+ Q + FS+ D IC RL+P+ +NPHRSLLG GNYD+
Sbjct: 12 PTVYHERQRLELCAVHALNNVLQQQ-LFSQEAADEICKRLAPDSRLNPHRSLLGTGNYDV 70
Query: 368 NVIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLRRRHWITIR 547
NVIMAALQ G A+W+D+R+ L L + G ILN+PS LG + LPLRRRHW+ +R
Sbjct: 71 NVIMAALQGLGLAAVWWDRRRPLSQLALPQVLGLILNLPSPVSLGLLSLPLRRRHWVALR 130
Query: 548 QIQGNFYNLDSKLDSPQLIG 607
Q+ G +YNLDSKL +P+ +G
Sbjct: 131 QVDGVYYNLDSKLRAPEALG 150
>BC051380-1|AAH51380.1| 208|Homo sapiens JOSD2 protein protein.
Length = 208
Score = 176 bits (429), Expect = 5e-44
Identities = 79/140 (56%), Positives = 103/140 (73%)
Frame = +2
Query: 188 PTIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDI 367
PT+YHE+Q ELCA+HALNN+ Q + FS+ D IC RL+P+ +NPHRSLLG GNYD+
Sbjct: 32 PTVYHERQRLELCAVHALNNVLQQQ-LFSQEAADEICKRLAPDSRLNPHRSLLGTGNYDV 90
Query: 368 NVIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLRRRHWITIR 547
NVIMAALQ G A+W+D+R+ L L + G ILN+PS LG + LPLRRRHW+ +R
Sbjct: 91 NVIMAALQGLGLAAVWWDRRRPLSQLALPQVLGLILNLPSPVSLGLLSLPLRRRHWVALR 150
Query: 548 QIQGNFYNLDSKLDSPQLIG 607
Q+ G +YNLDSKL +P+ +G
Sbjct: 151 QVDGVYYNLDSKLRAPEALG 170
>AF247787-1|AAL95692.1| 188|Homo sapiens hypothetical transmembrane
protein SBBI54 protein.
Length = 188
Score = 176 bits (429), Expect = 5e-44
Identities = 79/140 (56%), Positives = 103/140 (73%)
Frame = +2
Query: 188 PTIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDI 367
PT+YHE+Q ELCA+HALNN+ Q + FS+ D IC RL+P+ +NPHRSLLG GNYD+
Sbjct: 12 PTVYHERQRLELCAVHALNNVLQQQ-LFSQEAADEICKRLAPDSRLNPHRSLLGTGNYDV 70
Query: 368 NVIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLRRRHWITIR 547
NVIMAALQ G A+W+D+R+ L L + G ILN+PS LG + LPLRRRHW+ +R
Sbjct: 71 NVIMAALQGLGLAAVWWDRRRPLSQLALPQVLGLILNLPSPVSLGLLSLPLRRRHWVALR 130
Query: 548 QIQGNFYNLDSKLDSPQLIG 607
Q+ G +YNLDSKL +P+ +G
Sbjct: 131 QVDGVYYNLDSKLRAPEALG 150
>U64822-1|AAB63354.1| 373|Homo sapiens josephin MJD1 protein.
Length = 373
Score = 49.2 bits (112), Expect = 1e-05
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Frame = +2
Query: 191 TIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDIN 370
+I+HEKQ LCA H LNNL Q FS EL +I +L + G+ + D
Sbjct: 2 SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQLDEEERMRMAEG--GVTSEDYR 58
Query: 371 VIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLR------RRH 532
+ ++ +F + L + + + N P +L + R + H
Sbjct: 59 TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEH 118
Query: 533 WITIRQIQGNFYNLDSKLDSPQLI 604
W T+R++ ++NL+S L P+LI
Sbjct: 119 WFTVRKLGKQWFNLNSLLTGPELI 142
>U64821-1|AAB63353.1| 364|Homo sapiens josephin MJD1 protein.
Length = 364
Score = 49.2 bits (112), Expect = 1e-05
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Frame = +2
Query: 191 TIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDIN 370
+I+HEKQ LCA H LNNL Q FS EL +I +L + G+ + D
Sbjct: 3 SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQLDEEERMRMAEG--GVTSEDYR 59
Query: 371 VIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLR------RRH 532
+ ++ +F + L + + + N P +L + R + H
Sbjct: 60 TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEH 119
Query: 533 WITIRQIQGNFYNLDSKLDSPQLI 604
W T+R++ ++NL+S L P+LI
Sbjct: 120 WFTVRKLGKQWFNLNSLLTGPELI 143
>U64820-1|AAB63352.1| 361|Homo sapiens josephin MJD1 protein.
Length = 361
Score = 49.2 bits (112), Expect = 1e-05
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Frame = +2
Query: 191 TIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDIN 370
+I+HEKQ LCA H LNNL Q FS EL +I +L + G+ + D
Sbjct: 3 SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQLDEEERMRMAEG--GVTSEDYR 59
Query: 371 VIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLR------RRH 532
+ ++ +F + L + + + N P +L + R + H
Sbjct: 60 TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEH 119
Query: 533 WITIRQIQGNFYNLDSKLDSPQLI 604
W T+R++ ++NL+S L P+LI
Sbjct: 120 WFTVRKLGKQWFNLNSLLTGPELI 143
>S75313-1|AAB33571.1| 360|Homo sapiens MJD1 protein protein.
Length = 360
Score = 49.2 bits (112), Expect = 1e-05
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Frame = +2
Query: 191 TIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDIN 370
+I+HEKQ LCA H LNNL Q FS EL +I +L + G+ + D
Sbjct: 3 SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQLDEEERMRMAEG--GVTSEDYR 59
Query: 371 VIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLR------RRH 532
+ ++ +F + L + + + N P +L + R + H
Sbjct: 60 TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEH 119
Query: 533 WITIRQIQGNFYNLDSKLDSPQLI 604
W T+R++ ++NL+S L P+LI
Sbjct: 120 WFTVRKLGKQWFNLNSLLTGPELI 143
>EU009923-1|ABS29269.1| 361|Homo sapiens ataxin 3 protein.
Length = 361
Score = 49.2 bits (112), Expect = 1e-05
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Frame = +2
Query: 191 TIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDIN 370
+I+HEKQ LCA H LNNL Q FS EL +I +L + G+ + D
Sbjct: 3 SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQLDEEERMRMAEG--GVTSEDYR 59
Query: 371 VIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLR------RRH 532
+ ++ +F + L + + + N P +L + R + H
Sbjct: 60 TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEH 119
Query: 533 WITIRQIQGNFYNLDSKLDSPQLI 604
W T+R++ ++NL+S L P+LI
Sbjct: 120 WFTVRKLGKQWFNLNSLLTGPELI 143
>BC095402-1|AAH95402.1| 370|Homo sapiens ATXN3 protein protein.
Length = 370
Score = 49.2 bits (112), Expect = 1e-05
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Frame = +2
Query: 191 TIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDIN 370
+I+HEKQ LCA H LNNL Q FS EL +I +L + G+ + D
Sbjct: 3 SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQLDEEERMRMAEG--GVTSEDYR 59
Query: 371 VIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLR------RRH 532
+ ++ +F + L + + + N P +L + R + H
Sbjct: 60 TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEH 119
Query: 533 WITIRQIQGNFYNLDSKLDSPQLI 604
W T+R++ ++NL+S L P+LI
Sbjct: 120 WFTVRKLGKQWFNLNSLLTGPELI 143
>BC033711-1|AAH33711.1| 370|Homo sapiens ATXN3 protein protein.
Length = 370
Score = 49.2 bits (112), Expect = 1e-05
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Frame = +2
Query: 191 TIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDIN 370
+I+HEKQ LCA H LNNL Q FS EL +I +L + G+ + D
Sbjct: 3 SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQLDEEERMRMAEG--GVTSEDYR 59
Query: 371 VIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLR------RRH 532
+ ++ +F + L + + + N P +L + R + H
Sbjct: 60 TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEH 119
Query: 533 WITIRQIQGNFYNLDSKLDSPQLI 604
W T+R++ ++NL+S L P+LI
Sbjct: 120 WFTVRKLGKQWFNLNSLLTGPELI 143
>AB038653-2|BAB55646.1| 364|Homo sapiens ataxin-3 protein.
Length = 364
Score = 49.2 bits (112), Expect = 1e-05
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Frame = +2
Query: 191 TIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDIN 370
+I+HEKQ LCA H LNNL Q FS EL +I +L + G+ + D
Sbjct: 3 SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQLDEEERMRMAEG--GVTSEDYR 59
Query: 371 VIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLR------RRH 532
+ ++ +F + L + + + N P +L + R + H
Sbjct: 60 TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEH 119
Query: 533 WITIRQIQGNFYNLDSKLDSPQLI 604
W T+R++ ++NL+S L P+LI
Sbjct: 120 WFTVRKLGKQWFNLNSLLTGPELI 143
>AB038653-1|BAB55645.1| 361|Homo sapiens ataxin-3 protein.
Length = 361
Score = 49.2 bits (112), Expect = 1e-05
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Frame = +2
Query: 191 TIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLGNYDIN 370
+I+HEKQ LCA H LNNL Q FS EL +I +L + G+ + D
Sbjct: 3 SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQLDEEERMRMAEG--GVTSEDYR 59
Query: 371 VIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLR------RRH 532
+ ++ +F + L + + + N P +L + R + H
Sbjct: 60 TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEH 119
Query: 533 WITIRQIQGNFYNLDSKLDSPQLI 604
W T+R++ ++NL+S L P+LI
Sbjct: 120 WFTVRKLGKQWFNLNSLLTGPELI 143
>AB050195-1|BAB18799.1| 346|Homo sapiens protein ( Homo sapiens
mRNA, partial cds, clone:H2-5, MJD homolog. ).
Length = 346
Score = 39.5 bits (88), Expect = 0.011
Identities = 46/150 (30%), Positives = 64/150 (42%), Gaps = 18/150 (12%)
Frame = +2
Query: 221 LCALHALNNLFQTRGTFSKSELDAICSRLSPNVWIN-----------------PHRSLLG 349
LCA H LNNL Q FS EL +I +L + P ++
Sbjct: 4 LCAQHCLNNLLQGE-YFSPVELASIAHQLDEEERMRMAEGGVTSEEYLAFLQQPSENMDD 62
Query: 350 LGNYDINVIMAALQKKGCEAIWFDKRKDPGC-LDLANICGFILNVPSDYKLGFVMLPLRR 526
G + I VI AL+ G E I F+ + +D N FI N YK
Sbjct: 63 TGFFSIQVISNALKFWGLEIIHFNNPEYQMLGIDPINERSFICN----YK---------- 108
Query: 527 RHWITIRQIQGNFYNLDSKLDSPQLIGRSC 616
+HW TIR+ +++NL+S L P+LI +C
Sbjct: 109 QHWFTIRKFGKHWFNLNSLLAGPELISDTC 138
>AB050194-1|BAB18798.1| 306|Homo sapiens ataxin-3 protein.
Length = 306
Score = 32.7 bits (71), Expect = 1.2
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 353 GNYDINVIMAALQKKGCEAIWFDKRKDPGC-LDLANICGFILNVPSDYKLGFVMLPLRRR 529
G + I VI AL+ G E I F+ + +D N FI N YK
Sbjct: 18 GFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICN----YK----------E 63
Query: 530 HWITIRQIQGNFYNLDSKLDSPQLI 604
HW T+R++ ++NL+S L P+LI
Sbjct: 64 HWFTVRKLGKQWFNLNSLLTGPELI 88
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,168,506
Number of Sequences: 237096
Number of extensions: 1985459
Number of successful extensions: 6588
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6580
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -