Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7d20
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024860-2|AAN84888.1|  173|Caenorhabditis elegans Hypothetical ...   132   2e-31
Z82052-8|CAD89751.2|  325|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U10414-4|AAW30666.1|  641|Caenorhabditis elegans Neurofibromatos...    28   7.0  
U10414-3|AAK68385.1|  709|Caenorhabditis elegans Neurofibromatos...    28   7.0  
U10414-2|AAA19073.1|  654|Caenorhabditis elegans Neurofibromatos...    28   7.0  

>AC024860-2|AAN84888.1|  173|Caenorhabditis elegans Hypothetical
           protein Y71H2AR.3 protein.
          Length = 173

 Score =  132 bits (320), Expect = 2e-31
 Identities = 60/143 (41%), Positives = 87/143 (60%)
 Frame = +2

Query: 176 MSAKPTIYHEKQIKELCALHALNNLFQTRGTFSKSELDAICSRLSPNVWINPHRSLLGLG 355
           M++ P IYHEKQ  + C +H +NN+ Q +  F  +++D IC   + + W NPHRS +G G
Sbjct: 1   MTSSPEIYHEKQRLQYCLIHTVNNILQ-KSEFDPTKMDEICYAFNESKWFNPHRSWIGTG 59

Query: 356 NYDINVIMAALQKKGCEAIWFDKRKDPGCLDLANICGFILNVPSDYKLGFVMLPLRRRHW 535
           NYD N++MAALQK   + +WFDKR     +++ N+   + N+PS   L       R RHW
Sbjct: 60  NYDANILMAALQKHDLKVMWFDKRVSVEKINMENVKAVVFNIPSRTLLTL----YRGRHW 115

Query: 536 ITIRQIQGNFYNLDSKLDSPQLI 604
             + Q  G FYN+DSK+  PQ+I
Sbjct: 116 FAVIQKNGIFYNVDSKIKQPQVI 138


>Z82052-8|CAD89751.2|  325|Caenorhabditis elegans Hypothetical
           protein T25E12.13 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 119 IVLFYKLVKWKYVECNMS 172
           + LFYK+VKW Y  C+ S
Sbjct: 53  VQLFYKIVKWSYWFCSAS 70


>U10414-4|AAW30666.1|  641|Caenorhabditis elegans Neurofibromatosis
           homolog protein1, isoform c protein.
          Length = 641

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 131 YKLVKWKYVECNMSEMSAKPTIYHEKQIKELCALHALNNLFQTRGTFS-KSELDAICSRL 307
           YK +K K     +  M A+  I   ++  +  A  A ++  +T   +  KSE++A C+RL
Sbjct: 345 YKEMKQKVEVMTLELMKAQENIRKAEEANDQLAEKARHSEHETLMLYKQKSEVEAECNRL 404

Query: 308 SPN 316
           S N
Sbjct: 405 SMN 407


>U10414-3|AAK68385.1|  709|Caenorhabditis elegans Neurofibromatosis
           homolog protein1, isoform b protein.
          Length = 709

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 131 YKLVKWKYVECNMSEMSAKPTIYHEKQIKELCALHALNNLFQTRGTFS-KSELDAICSRL 307
           YK +K K     +  M A+  I   ++  +  A  A ++  +T   +  KSE++A C+RL
Sbjct: 345 YKEMKQKVEVMTLELMKAQENIRKAEEANDQLAEKARHSEHETLMLYKQKSEVEAECNRL 404

Query: 308 SPN 316
           S N
Sbjct: 405 SMN 407


>U10414-2|AAA19073.1|  654|Caenorhabditis elegans Neurofibromatosis
           homolog protein1, isoform a protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 131 YKLVKWKYVECNMSEMSAKPTIYHEKQIKELCALHALNNLFQTRGTFS-KSELDAICSRL 307
           YK +K K     +  M A+  I   ++  +  A  A ++  +T   +  KSE++A C+RL
Sbjct: 345 YKEMKQKVEVMTLELMKAQENIRKAEEANDQLAEKARHSEHETLMLYKQKSEVEAECNRL 404

Query: 308 SPN 316
           S N
Sbjct: 405 SMN 407


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,302,410
Number of Sequences: 27780
Number of extensions: 327955
Number of successful extensions: 795
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)