Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7d17
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 36 0.005
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.12
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po... 29 0.83
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po... 27 1.9
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 27 2.5
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 27 2.5
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 2.5
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 2.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.3
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 26 4.4
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 4.4
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 7.7
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 7.7
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 35.9 bits (79), Expect = 0.005
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +1
Query: 97 PSLEDMKVDNMMRAQISQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIA 276
PS V N+ + + Q+ + P V+ A+P P+ATH P + + A A
Sbjct: 324 PSASTSAVTNITKPTLIQNPSTPLSVSNSKVASPETPNATHTAPKVEMRYASAAAAAAAA 383
Query: 277 L--NMP--EYQIQQVQPTSSN 327
L P Y +QQV+P + N
Sbjct: 384 LAKESPSHHYIMQQVRPETPN 404
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.5 bits (68), Expect = 0.12
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +1
Query: 145 SQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEYQIQQVQPTSS 324
S HQ P + VAP++ + P P+A V + AL++P+ + V P
Sbjct: 528 SVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVP 587
Query: 325 NV----VAPLSSQSLSLPKATVTQAIRQV 399
+V VAP+ ++ S+P+ V +V
Sbjct: 588 SVPQPPVAPVVPEAPSVPQPPVAPVAPEV 616
>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 213
Score = 28.7 bits (61), Expect = 0.83
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 475 VAANSPGALAGLRFGDQILEINNVT 549
VA SP AGL GD+++ + NVT
Sbjct: 135 VAVESPAQEAGLCIGDELVHVQNVT 159
>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 27.5 bits (58), Expect = 1.9
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Frame = +1
Query: 70 FSVSIMSFYPSLEDMKVDNMMRAQISQHQAPPSYVAPQ---------LCATPSAPSATHV 222
F ++ L ++ V N ++ + +A P Y+A + TP+ + T
Sbjct: 170 FKKNVPCVVDGLNEVNVLNQLKLSAEETRAHPFYLAKGKSGENKNEWIINTPNWGTNTFS 229
Query: 223 YPTLGEYMGMELSQAVIALNMPEYQIQQVQPTSSNVV 333
P G+Y G L+ AV AL++ + P N V
Sbjct: 230 TPLKGDYQGQNLACAVTALDILSSSFSIMLPHVQNGV 266
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 27.1 bits (57), Expect = 2.5
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +1
Query: 154 QAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEYQIQQVQPTSSNVV 333
Q PS+ APQ PS S ++V P L + + +++ P Y Q + SS+ V
Sbjct: 263 QLAPSFAAPQAHPLPSHLSQSNVPPQL-SHSSVPSPAPPRSVSQPTYFSQPMPQFSSSFV 321
Query: 334 APLSS 348
SS
Sbjct: 322 PGTSS 326
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 630 SRTAHGDIICRSFLKDI-MTFIHCHSSNSDIID 535
S T GDI S I +T IHCHSS ++D
Sbjct: 142 SPTNPGDIYLASLDTAIPVTLIHCHSSAVQVVD 174
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 313 PTSSNVVAPLSSQSLSLPKATVTQAIRQVVLCKDRNGKCGLRLHSVDSGVFVCYVAANSP 492
P S +AP + SLS P+ T+ Q++ + L N + + + +G F V+A+ P
Sbjct: 298 PLQSPPLAPKTGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLP 357
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 244 MGMELSQAVIALNMPEYQIQQVQPTSSNVVAPLSSQSLSLPKATVTQA 387
M +S A N P Q +P ++ AP++S + ++ +AT A
Sbjct: 1012 MANPVSTAQQTQNRPPAPAMQARPNTTQAAAPVTSTTTTIKQATTVSA 1059
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 136 AQISQHQAPPSYVAPQLCATPSAPSATHV 222
A I+Q+ PS +AP + A SAPSA V
Sbjct: 1747 APINQNAYVPSNIAPAMGAMQSAPSAEAV 1775
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 26.2 bits (55), Expect = 4.4
Identities = 22/89 (24%), Positives = 39/89 (43%)
Frame = +1
Query: 97 PSLEDMKVDNMMRAQISQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIA 276
PS D K ++ + + + P+ +P L A + + +L M S + A
Sbjct: 322 PSSNDTKQESSL-IDLMKLTEEPAVPSPSLPTNVPANQSLSMLSSLSNSMS---STSNGA 377
Query: 277 LNMPEYQIQQVQPTSSNVVAPLSSQSLSL 363
LN P Y + T+S++ + L S SL +
Sbjct: 378 LNSPSYSQAAIPNTNSSLTSILQSDSLMI 406
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.2 bits (55), Expect = 4.4
Identities = 18/78 (23%), Positives = 40/78 (51%)
Frame = +1
Query: 115 KVDNMMRAQISQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEY 294
++ + + ++ H PPS++ P+L + S P+ + + E + LS+ + + P
Sbjct: 358 RLSSFLYHKLLGHDIPPSFLKPKLPSDLSVPNLPKLNASQSEAVRAVLSKPLSLIQGPPG 417
Query: 295 QIQQVQPTSSNVVAPLSS 348
+ V TS++VV L++
Sbjct: 418 TGKTV--TSASVVYHLAT 433
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 7.7
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Frame = +1
Query: 97 PSLEDMKVDNMMRAQISQH-QAPPSYVAPQLCATPSAPSATHVYPTLGEYMGM--ELSQA 267
P D +N + I Q PSY P + PSA ++ PT + E +
Sbjct: 291 PEFNDYFKENGLNYDIDQLISKAPSY--PYSSSRPSASASLASSPTRSAFRPKTSETVSS 348
Query: 268 VIALNMPEYQIQQ-VQPTSSNVVAPLSSQSLSLPKATVTQAIRQ 396
+ + P + V+P S+ V ++ LS+P ++ +A Q
Sbjct: 349 EVVSSPPTSPLHSPVKPVSNEQVEQVTEVELSIPVPSIQEAESQ 392
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.4 bits (53), Expect = 7.7
Identities = 19/86 (22%), Positives = 35/86 (40%)
Frame = +1
Query: 145 SQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEYQIQQVQPTSS 324
S H P S Q + S+ + + E + + + +I PTS
Sbjct: 1156 SNHSNPWSVATHQRGSFSSSTGVKKSFNGILREAAREEGSSQVIYQESKKRISNGSPTSW 1215
Query: 325 NVVAPLSSQSLSLPKATVTQAIRQVV 402
N++ S +S SLPK + +I +++
Sbjct: 1216 NLLTKPSPRSASLPKNSQPLSISEIM 1241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,880,206
Number of Sequences: 5004
Number of extensions: 58981
Number of successful extensions: 161
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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