Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7d16
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 33 0.20
07_03_0740 - 21102015-21102287,21102402-21102555,21102647-211028... 31 0.80
06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089 31 1.1
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850... 29 3.2
05_05_0381 + 24531622-24532918,24535334-24535468,24535592-245357... 29 3.2
04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572... 29 4.3
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 29 4.3
09_04_0751 + 19927164-19927835,19927926-19928663 28 7.5
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 27 9.9
07_03_0742 + 21113682-21114567,21115413-21115552,21115637-211158... 27 9.9
>04_03_0659 -
18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/89 (22%), Positives = 42/89 (47%)
Frame = +1
Query: 166 REGRTRSMAVMMELEESVSDSKLHKESTAKKDLRPSSAISFSKSDHGPETTSSTEQLRQY 345
+E T + +++++ ++HKE T K + S +S SKS TS+ E+ ++
Sbjct: 118 QEMETNEQVKSKDTSKAIAE-RIHKEYTTKVNKHESRTVSNSKSKEQLIRTSNIEEKQKR 176
Query: 346 KSWVSNERWNELKKIAETAMKQRKVFMIK 432
K +S ++ ++ A + K + K
Sbjct: 177 KQIISENNSKDMTQVQANAEEFHKEYTTK 205
>07_03_0740 -
21102015-21102287,21102402-21102555,21102647-21102884,
21103008-21103218,21103303-21103442,21103537-21103665,
21104120-21104960
Length = 661
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +1
Query: 556 LSKVERMILYKFMEHHSVDFLW--TTKRDKYDW 648
L + ER+++Y+F+ + S+D + T KR+K DW
Sbjct: 418 LDQHERLLVYEFVPNRSLDLILFDTEKREKLDW 450
>06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089
Length = 495
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/104 (23%), Positives = 44/104 (42%)
Frame = +1
Query: 187 MAVMMELEESVSDSKLHKESTAKKDLRPSSAISFSKSDHGPETTSSTEQLRQYKSWVSNE 366
MA+ M EES S S + S + + S + + G ++ +R ++
Sbjct: 63 MAMAMVREESTSSSSQGEVSRSTVAVTGSPVKCLAATGDGLVSSHQDGTIRVWRH-AGGR 121
Query: 367 RWNELKKIAETAMKQRKVFMIKGGGFPAIRRAMLERGWVEKYES 498
R L+ + TA + ++ GGG+ +RR R WV ++
Sbjct: 122 RRLALRAVLPTAADCLRALLLPGGGYVEVRRHK-RRAWVHHVDA 164
>08_01_0871 +
8502396-8502417,8503606-8503732,8503891-8503990,
8504725-8504793,8504870-8505043,8505196-8505373,
8505462-8505594,8505702-8505864,8507031-8507181,
8507266-8507366,8507633-8507788,8508105-8508173,
8508256-8508324,8508403-8508540,8508639-8508767,
8509013-8509053,8510019-8510106,8510199-8510339,
8510428-8510553,8510671-8510736,8510994-8511291,
8511387-8511595,8511689-8511802
Length = 953
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 370 WNELKKIAETAMKQRKVFMIKGGGFPAI 453
W+ K + QRK+ ++KGGG PA+
Sbjct: 719 WDSAKSLMHGNSYQRKLSIVKGGGSPAL 746
>05_05_0381 +
24531622-24532918,24535334-24535468,24535592-24535764,
24536029-24536239,24536287-24536554,24536664-24536814,
24536938-24537246
Length = 847
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/24 (54%), Positives = 20/24 (83%), Gaps = 1/24 (4%)
Frame = +1
Query: 568 ERMILYKFMEHHSVD-FLWTTKRD 636
E+M+LY+FME+ S+D FL+ T R+
Sbjct: 587 EKMLLYEFMENKSLDCFLFGTNRN 610
>04_01_0438 -
5723451-5723759,5723795-5723863,5724025-5724210,
5724297-5724558,5724662-5724960,5725040-5725453,
5725533-5725899,5726002-5726146,5726562-5727558
Length = 1015
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +1
Query: 202 ELEESVSDSKLHKESTAKKDLRPSSAISFSKSDHGPETTSSTEQLRQYKSWVSNERWNEL 381
EL SD + + + A D P A+ +D + EQ+R++ W+ NE +
Sbjct: 23 ELTGKCSDQRATRPAAAVPD--PPQALGALPTDSVTLVRRTGEQIRKFSQWIENEPKEKW 80
Query: 382 KKIAET 399
K +T
Sbjct: 81 AKTYDT 86
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 373 NELKKIAETAMKQRKVFMIKGGGFPAIRRAMLERGWVEKYE 495
NEL+++ K F+I GGG P I +M W ++ +
Sbjct: 415 NELQRVNWLRCLVNKRFLIAGGGAPEIEMSMQLAAWAKELQ 455
>09_04_0751 + 19927164-19927835,19927926-19928663
Length = 469
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -3
Query: 520 LADDVPYGIHIFLPSL-VQAWLD 455
L DD YG H+F P+ +AWL+
Sbjct: 251 LPDDTSYGFHLFSPTTETKAWLE 273
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +1
Query: 427 IKGGGFPAIRRAMLERGWVEKYESHKVRHPP--TNVDPKKASGKELSKVERMILY 585
+ G F + R A L R W + V PP D ++ G + +E ++++
Sbjct: 380 VGNGPFSSTRHARLARSWAAHFGRWGVFFPPPTPQADEEEEQGSSVEMLEELLIF 434
>07_03_0742 +
21113682-21114567,21115413-21115552,21115637-21115847,
21115947-21116184,21116281-21116431,21116535-21116825
Length = 638
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +1
Query: 556 LSKVERMILYKFMEHHSVDFLW--TTKRDKYDW 648
L + ER+++Y+F+ + S+D + T K ++ DW
Sbjct: 390 LEQQERLLVYEFVPNRSLDLILFDTEKSEQLDW 422
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,954,716
Number of Sequences: 37544
Number of extensions: 338210
Number of successful extensions: 970
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -