Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7d12
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0665 + 19818500-19819013,19819169-19819260,19819435-198200...    31   0.65 
11_04_0001 + 11984639-11984875,11984989-11985278,11985361-119857...    29   4.6  
09_01_0086 - 1225132-1225299,1225530-1225679,1227629-1228006,122...    28   8.0  

>08_02_0665 +
           19818500-19819013,19819169-19819260,19819435-19820056,
           19820575-19820775,19821327-19821395,19821428-19821522,
           19821608-19822153
          Length = 712

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = -3

Query: 615 AFSQIRVLAAVSVVGAGIKSLVRVCVTFLSV 523
           +FS IR +AA S   A +  LVRVCV +LSV
Sbjct: 557 SFSDIRSVAANSTFHALLLKLVRVCVGYLSV 587


>11_04_0001 +
           11984639-11984875,11984989-11985278,11985361-11985719,
           11985797-11985984,11986058-11986247,11986497-11986631,
           11986694-11986947
          Length = 550

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
 Frame = +1

Query: 268 KEPPD--DFNVANQRLWSQHCRVSQVLQDNIXXXXXXXXXXXXXDGKRTTSNQTGQENGN 441
           +E PD  DF V  +R++        V   ++               +R+   QTGQ +G 
Sbjct: 47  REDPDSLDFMVMKERMYKIFSNAIVVCYSHLLPEFALMKSDPPITQRRSPRCQTGQGSGG 106

Query: 442 PKIQKNVK 465
           PKIQ   +
Sbjct: 107 PKIQSETQ 114


>09_01_0086 -
           1225132-1225299,1225530-1225679,1227629-1228006,
           1229103-1229150
          Length = 247

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 329 CLKCFKTI*NHRTHNRVHASHQMAKEQHRIKR 424
           C+ C KTI  H TH+    SHQ+ K +  I R
Sbjct: 94  CINCLKTICPHCTHD--EPSHQLLKVRRYIFR 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,715,187
Number of Sequences: 37544
Number of extensions: 390494
Number of successful extensions: 904
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)