Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7d11
(181 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 25 1.8
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 24 3.1
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 23 4.0
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 23 4.0
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 23 5.3
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 23 5.3
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 23 7.1
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 22 9.3
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 22 9.3
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 22 9.3
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe... 22 9.3
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 22 9.3
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 22 9.3
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +1
Query: 58 VSLICYLLYLIHPYWILFLSIVMIYTMYTQFIV 156
+ L+C LL I P W ++ V + + F++
Sbjct: 185 ILLVCVLLNFIPPKWFRYIFRVSVAVILLDFVL 217
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = -1
Query: 124 LQWTETISSMDVLSIISNKLRTLLKEY 44
+Q ++S + LSI S+KLR+L++++
Sbjct: 91 IQGKSCLTSFNGLSITSDKLRSLVRKW 117
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 23.4 bits (48), Expect = 4.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 112 ETISSMDVLSIISNKLRTLLKEYTLFPFSFN 20
+ +SS+D L I +KLR ++ E + +FN
Sbjct: 540 DKLSSIDALLIQDSKLREMVSEKCISLSNFN 570
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 23.4 bits (48), Expect = 4.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +1
Query: 52 LIVSLICYLLYLIHPYWILFLSIVMIYTMYTQFIVIN 162
L+++L+C L+++H Y IY++ ++F I+
Sbjct: 633 LVLTLLCRWLHMVHLYSSRTSITSWIYSIASKFYFID 669
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 23.0 bits (47), Expect = 5.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 2 SSCKMFIKTKWK*CIFF 52
S CK+F+KT K IFF
Sbjct: 25 SRCKLFLKTLPKTSIFF 41
>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 255
Score = 23.0 bits (47), Expect = 5.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1
Query: 94 PYWILFLSIVM 126
PYW+ +LSI+M
Sbjct: 49 PYWMSYLSIIM 59
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 138 VHTIHCDKLTCFF 176
VHTI C + CFF
Sbjct: 396 VHTIPCAAVLCFF 408
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 22.2 bits (45), Expect = 9.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 103 SSMDVLSIISNKLRTLLKEYTLFPFSFNE 17
S+ D +S+ L+ LLK T PF ++
Sbjct: 283 SAADSFKEVSSFLKNLLKNVTATPFEVSD 311
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 22.2 bits (45), Expect = 9.3
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 40 VYILLIVSLICYLLYL 87
+ LL++SLI Y+LY+
Sbjct: 24 IIALLVLSLIFYILYI 39
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 22.2 bits (45), Expect = 9.3
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = +3
Query: 114 VHCNDLYNVHTIHCD 158
+H D+ + T+HCD
Sbjct: 287 IHLVDILEILTVHCD 301
>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 537
Score = 22.2 bits (45), Expect = 9.3
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 91 VLSIISNKLRTLLKEY-TLFPFSFNEHFAR 5
++SI+ + + E+ +LF F+FN H AR
Sbjct: 84 IVSIVVFGVMLSIGEFNSLFDFNFNTHAAR 113
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 22.2 bits (45), Expect = 9.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 147 LCVHCIDHYNGQKQY 103
+C+ DHYN QK +
Sbjct: 1394 ICIVASDHYNRQKLF 1408
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 22.2 bits (45), Expect = 9.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 138 VHTIHCDKLTCF 173
V T HCDK CF
Sbjct: 51 VFTSHCDKKHCF 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 756,151
Number of Sequences: 5004
Number of extensions: 11040
Number of successful extensions: 42
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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