Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7d04
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide... 31 0.15
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 26 4.2
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz... 26 4.2
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 25 7.4
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 7.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 7.4
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 25 7.4
SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 9.7
>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 31.1 bits (67), Expect = 0.15
Identities = 36/198 (18%), Positives = 80/198 (40%), Gaps = 18/198 (9%)
Frame = +1
Query: 124 GKTKQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEILKSAGIKT 303
GK + +++ + P L + DRI+A D + + + K + + + F++LK ++T
Sbjct: 18 GKVRDLYECVEFPDDLLFVATDRISAYDFIMENGIPEKGKVLTKISEFWFDVLK-PHVQT 76
Query: 304 AFV--------------KIASETAFLSKKCEMIPIEWVTRRLATGSFLK--RNPGVPEGF 435
+ + + + L KK +++PIE + R TGS K + G G
Sbjct: 77 HLITSRWEELPPVITKHEELKDRSMLVKKYKILPIEAIVRGYITGSAWKEYQKQGTVHGL 136
Query: 436 RFTPPKQETFFKDDANHDPQWSEEQIISAKFNYNGL--LIGRDEVDYMRKATILIFEILE 609
+E + P + + + + ++G + + + ++ +++I
Sbjct: 137 NVPTGMKEAEAFPEPLFTPSTKAAEGHDENIHPDEVSKIVGPELAKQVAETSVKLYKIAR 196
Query: 610 KAWALRDCALIDMKIEFG 663
+ + D K EFG
Sbjct: 197 DVALKKGIIIADTKFEFG 214
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -2
Query: 177 KQAVPRLVRNIEYLFGLTLNEKFAQFILSN 88
+ P+L+ N+ L L++NEK+ F++ N
Sbjct: 49 RNGAPKLLLNLFSLENLSMNEKYQVFVVLN 78
>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
Mug22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 26.2 bits (55), Expect = 4.2
Identities = 27/122 (22%), Positives = 54/122 (44%)
Frame = +1
Query: 250 NQTNAKVFEILKSAGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPE 429
NQ+ K + S +K F+ +A + + K C M+ + A + LK V +
Sbjct: 82 NQSLMKKTSVSTSNTVKMVFMSLAKQIEQMLKFCMMVYSKLCE---AFETTLK----VAK 134
Query: 430 GFRFTPPKQETFFKDDANHDPQWSEEQIISAKFNYNGLLIGRDEVDYMRKATILIFEILE 609
F+ QE FF+ + + E Q++S F L++ + D + + +++I+E
Sbjct: 135 EFQICDSSQEWFFQFQLGYHRKQMELQMLS--FVAEWLVLTQHYTDALNDSAKTLYDIME 192
Query: 610 KA 615
+
Sbjct: 193 SS 194
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +1
Query: 253 QTNAKVFEILKSAGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPE 429
QTN ++ + + K KIA T L K+ + P+ ++ +L +++ VPE
Sbjct: 29 QTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPE 87
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 402 ERASCKAAGNPFNGDHLTF 346
+R + K GN F GDH F
Sbjct: 21 KRRASKVVGNSFGGDHFNF 39
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 442 TPPKQETFFKDDANHDPQWSEEQIISAKFNY-NGLLIGRDEVDYMRKATIL 591
TP D+ D +E+Q + KFNY L RDE + K +L
Sbjct: 302 TPDTSPLLDSDEVVSDDDSNEQQTMMMKFNYLQHLRNKRDEAVHAEKRRLL 352
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +1
Query: 253 QTNAKVFEILKSAGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPE 429
QTN ++ + + K KIA T L K+ + P+ ++ +L +++ VPE
Sbjct: 29 QTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPE 87
>SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 139
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 217 AHDLEGKAAISNQTNAKVFEILKSAGIKTAFVKIASETAFLSKK 348
A+DL+ AI N+T V E + A SE+ +SKK
Sbjct: 18 AYDLDSSTAIENETKLSVKEKVAKEIANIALRSGGSESNGISKK 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,582
Number of Sequences: 5004
Number of extensions: 61894
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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