Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7c23
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    76   5e-15
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    34   0.015
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    33   0.035
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    32   0.080
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    32   0.080
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    30   0.25 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   5.3  

>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 75.8 bits (178), Expect = 5e-15
 Identities = 35/56 (62%), Positives = 42/56 (75%)
 Frame = +2

Query: 470 DDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQ 637
           D   +K ++K  P D R KT DVT TRG EFE++ LKRELLMGIFE G+E+PSPIQ
Sbjct: 16  DRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQ 71


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 34.3 bits (75), Expect = 0.015
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
 Frame = +2

Query: 371 DKFGKMMTENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDR-RIKTSDV-TD 544
           D+ G  +TEN  + S    +  + T  E   +      +S L IP K+  R+K +D+  D
Sbjct: 49  DRLGPKITENVDAKSEQ--DKATNTIAEDANTKQSENDESNL-IPNKNEVRVKLADLQAD 105

Query: 545 TRG-----NEFEEFCLKRELLMGIFEKGWEKPSPIQ 637
                     FEE  LK ELL GI+   ++KPS IQ
Sbjct: 106 PNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQ 141


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 33.1 bits (72), Expect = 0.035
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 554 NEFEEFCLKRELLMGIFEKGWEKPSPIQ 637
           + FEE  LK +LL GI+  G+E PS +Q
Sbjct: 21  SSFEEMNLKEDLLRGIYAYGYETPSAVQ 48


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 31.9 bits (69), Expect = 0.080
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 560 FEEFCLKRELLMGIFEKGWEKPSPIQ 637
           F++  LK ELL GI+  G+E+PS IQ
Sbjct: 21  FDDMNLKPELLRGIYAYGFERPSAIQ 46


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 31.9 bits (69), Expect = 0.080
 Identities = 24/82 (29%), Positives = 38/82 (46%)
 Frame = +2

Query: 392 TENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEF 571
           T+N+     +VG ++S          +D G     K+   +RR K         N F+  
Sbjct: 25  TDNQKDKHENVGENVSD---------EDDGNYIASKLLESNRRTKGKKGNGKASN-FQSM 74

Query: 572 CLKRELLMGIFEKGWEKPSPIQ 637
            L + LL  IF+KG++ P+PIQ
Sbjct: 75  GLNQTLLRAIFKKGFKAPTPIQ 96


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 560 FEEFCLKRELLMGIFEKGWEKPSPIQ 637
           F +F LK ELL  I + G+E PS +Q
Sbjct: 53  FRDFLLKPELLRAITDSGFEHPSEVQ 78


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 401  RISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDT 547
            R+ SS +   ++ +   E+DK+ D  G  +KLK  PK   ++T D+  T
Sbjct: 1315 RVDSSFYTSENLRR---ELDKAFDRSGTAAKLK-HPKKTVVETLDILTT 1359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,024
Number of Sequences: 5004
Number of extensions: 36637
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)