Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7c23
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 89 3e-18
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 89 3e-18
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212... 84 8e-17
03_05_0052 - 20293197-20293310,20293938-20294024,20294133-202942... 31 0.77
06_03_1284 - 28988287-28988922,28989335-28989765,28989850-289899... 30 1.3
02_01_0355 + 2558792-2558862,2558993-2559099,2559185-2559615,256... 30 1.3
01_06_0020 + 25630728-25631023,25631308-25631548,25631629-256317... 30 1.3
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 30 1.8
10_03_0002 - 6858257-6861205 27 9.5
>04_04_0613 +
26617677-26617963,26618726-26618786,26619598-26619832,
26619958-26620196,26620493-26620744,26620844-26621024,
26621810-26621898,26622200-26622273,26622365-26622443
Length = 498
Score = 89.0 bits (211), Expect = 3e-18
Identities = 39/61 (63%), Positives = 51/61 (83%)
Frame = +2
Query: 455 VDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPI 634
+D S D WK++LK+PP+D R +T DVT T+GNEFE++ LKRELLMGI+EKG+E+PSPI
Sbjct: 93 IDSSSQD--WKAQLKLPPQDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPI 150
Query: 635 Q 637
Q
Sbjct: 151 Q 151
>02_05_0096 +
25785995-25786311,25786716-25786776,25787825-25788059,
25788292-25788530,25789700-25789951,25790043-25790223,
25790864-25790952,25791269-25791342,25791481-25791584,
25791919-25791957,25792324-25792436
Length = 567
Score = 89.0 bits (211), Expect = 3e-18
Identities = 39/61 (63%), Positives = 51/61 (83%)
Frame = +2
Query: 455 VDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPI 634
+D S D WK++LK+PP+D R +T DVT T+GNEFE++ LKRELLMGI+EKG+E+PSPI
Sbjct: 103 IDSSSQD--WKAQLKLPPQDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPI 160
Query: 635 Q 637
Q
Sbjct: 161 Q 161
>10_08_0553 -
18720436-18720494,18721102-18721106,18721136-18721257,
18721390-18721478,18722136-18722316,18722403-18722654,
18722755-18722993,18723680-18723914,18724072-18724132,
18724632-18724987
Length = 532
Score = 84.2 bits (199), Expect = 8e-17
Identities = 38/61 (62%), Positives = 49/61 (80%)
Frame = +2
Query: 455 VDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPI 634
VD S +D WK++L +P D R +T DVT T+GNEFE++ LKRELLMGI+EKG+E+PSPI
Sbjct: 116 VDSSSED--WKAQLNLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPI 173
Query: 635 Q 637
Q
Sbjct: 174 Q 174
>03_05_0052 -
20293197-20293310,20293938-20294024,20294133-20294270,
20295009-20295128,20295236-20295343,20296053-20296133,
20296216-20296456,20297010-20297305
Length = 394
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 554 NEFEEFCLKRELLMGIFEKGWEKPSPIQ 637
+ F++ ++ +LL GI+ G+EKPS IQ
Sbjct: 31 SSFDQMGIREDLLRGIYAYGFEKPSAIQ 58
>06_03_1284 -
28988287-28988922,28989335-28989765,28989850-28989956,
28990066-28990136
Length = 414
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 560 FEEFCLKRELLMGIFEKGWEKPSPIQ 637
F++ L+ LL GI+ G+EKPS IQ
Sbjct: 43 FDDMGLQENLLRGIYAYGFEKPSAIQ 68
>02_01_0355 +
2558792-2558862,2558993-2559099,2559185-2559615,
2560100-2560735
Length = 414
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 560 FEEFCLKRELLMGIFEKGWEKPSPIQ 637
F++ L+ LL GI+ G+EKPS IQ
Sbjct: 43 FDDMGLQENLLRGIYAYGFEKPSAIQ 68
>01_06_0020 +
25630728-25631023,25631308-25631548,25631629-25631709,
25632109-25632216,25632329-25632448,25632806-25632943,
25633064-25633150,25633802-25633915
Length = 394
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 554 NEFEEFCLKRELLMGIFEKGWEKPSPIQ 637
+ F++ ++ +LL GI+ G+EKPS IQ
Sbjct: 31 SSFDQMGIRDDLLRGIYAYGFEKPSAIQ 58
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = +2
Query: 425 GNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIF 604
G + +G+ + + ++ K + + +S+ N F E L R LL
Sbjct: 151 GEEEEKEEGDEEAAEEEEETDKKSGVVDPSKFFASSEGASFHANSFLELNLSRPLLRACE 210
Query: 605 EKGWEKPSPIQ 637
G++KP+PIQ
Sbjct: 211 ALGYQKPTPIQ 221
>10_03_0002 - 6858257-6861205
Length = 982
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 386 MMTENRISSSNHVGNSISQTKGEVDKSI 469
++ EN ++ S+HV N ++QTK + S+
Sbjct: 295 LLKENELNQSDHVDNILNQTKTMIAASV 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,224,623
Number of Sequences: 37544
Number of extensions: 185509
Number of successful extensions: 417
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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