Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7c23
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved ger...    96   2e-20
Z12116-1|CAA78102.1|  402|Caenorhabditis elegans protein ( C.ele...    33   0.23 
U13876-3|AAA21170.1|  402|Caenorhabditis elegans Initiation fact...    33   0.23 
AF039720-12|AAB96704.1|  399|Caenorhabditis elegans Hypothetical...    31   0.70 
AC024844-2|AAK29954.2|  399|Caenorhabditis elegans Hypothetical ...    31   0.70 
U13876-12|AAA21169.1|  363|Caenorhabditis elegans Hypothetical p...    30   1.2  
U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain (pr...    27   8.6  

>AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved
           germline helicase protein1 protein.
          Length = 430

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 41/55 (74%), Positives = 47/55 (85%)
 Frame = +2

Query: 473 DVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQ 637
           D  WK+ L +P KDRR KT+DVTDT+G EFE+FCL R+LLMGIFEKGWEKPSPIQ
Sbjct: 16  DENWKAGLNLPAKDRRFKTADVTDTKGVEFEDFCLGRDLLMGIFEKGWEKPSPIQ 70


>Z12116-1|CAA78102.1|  402|Caenorhabditis elegans protein (
           C.elegans mRNA for eIF-4A homologue. ).
          Length = 402

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +2

Query: 560 FEEFCLKRELLMGIFEKGWEKPSPIQ 637
           F++  LK ELL GI+  G+EKPS IQ
Sbjct: 31  FDDMELKEELLRGIYGFGFEKPSAIQ 56


>U13876-3|AAA21170.1|  402|Caenorhabditis elegans Initiation factor
           protein 1, isoforma protein.
          Length = 402

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +2

Query: 560 FEEFCLKRELLMGIFEKGWEKPSPIQ 637
           F++  LK ELL GI+  G+EKPS IQ
Sbjct: 31  FDDMELKEELLRGIYGFGFEKPSAIQ 56


>AF039720-12|AAB96704.1|  399|Caenorhabditis elegans Hypothetical
           protein F33D11.10 protein.
          Length = 399

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +2

Query: 560 FEEFCLKRELLMGIFEKGWEKPSPIQ 637
           F++  L+ +LL GI+  G+EKPS IQ
Sbjct: 28  FDKMGLREDLLRGIYAYGFEKPSAIQ 53


>AC024844-2|AAK29954.2|  399|Caenorhabditis elegans Hypothetical
           protein Y65B4A.6 protein.
          Length = 399

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +2

Query: 560 FEEFCLKRELLMGIFEKGWEKPSPIQ 637
           F++  L+ +LL GI+  G+EKPS IQ
Sbjct: 28  FDKMGLREDLLRGIYAYGFEKPSAIQ 53


>U13876-12|AAA21169.1|  363|Caenorhabditis elegans Hypothetical
           protein F57B9.3 protein.
          Length = 363

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +2

Query: 575 LKRELLMGIFEKGWEKPSPIQ 637
           LK ELL GI+  G+EKPS IQ
Sbjct: 3   LKEELLRGIYGFGFEKPSAIQ 23


>U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 7 protein.
          Length = 491

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 440 QTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELL 592
           + +GE+ K+I D+   SKL     D   +TS +  T G+  E   + RE L
Sbjct: 185 EERGELKKAIHDMRIVSKLSTDSTDTMFETSKLLYTVGDLEESLNVIRECL 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,507,672
Number of Sequences: 27780
Number of extensions: 194648
Number of successful extensions: 505
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)