Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7c21
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    28   1.3  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    25   6.8  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.8  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   9.0  

>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 170 LSRPTKKINRDFSDAVLLAEILSVHYPKLVEMHNYPPRNSHS 295
           LS PTKK   DFS+   LA+  S   P + E H   P+  H+
Sbjct: 213 LSSPTKKDLIDFSETRPLAQ-ASRATPDIKEQHAKKPKRKHT 253


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -2

Query: 372 IVLQHRLSLNFFRTLRLSVSQLLSFKEWLFL 280
           IV+ H+L++++ +TL+L  ++ L    W FL
Sbjct: 149 IVIPHKLAIHYLQTLQLIDNKKLLQITWNFL 179


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 433 VPNHDKYSFNDPW 395
           VPNHD+Y+F+ P+
Sbjct: 212 VPNHDEYAFSYPY 224


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 389 CAPGVIERVLVMVRDKIRRDEELNKSMRESEQNVSSGGSYYEACGEDENILV 544
           C    IER L MVR      +EL   M     ++ +  S+Y+   E  NI+V
Sbjct: 744 CQQNDIERALKMVRVHGPDQQELYIMMLNCFASLENVDSWYQDINEIVNIIV 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,059
Number of Sequences: 5004
Number of extensions: 40113
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)