Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7c21
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0273 - 7036125-7037999                                           32   0.43 
05_02_0076 - 6365230-6365240,6365634-6365805,6365990-6366031,636...    29   3.0  
12_02_0527 + 20047027-20047281,20048169-20048390,20048996-200493...    29   4.0  
07_01_0661 + 4968089-4969741                                           29   4.0  
10_08_1024 + 22371260-22371481,22371514-22372188,22372291-223732...    28   5.3  
12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990...    27   9.2  

>03_02_0273 - 7036125-7037999
          Length = 624

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 437 IRRDEELNKSMRESEQNVSSGGSYYEACGEDENILVVPVKTRVNGVLETVQ 589
           I R+EE+ ++    ++    G SYY A  E E   V P K  V G L  +Q
Sbjct: 325 IFREEEIMEATMNLDEQCKLGSSYYRANLEREVFAVKPAKGNVAGELRMMQ 375


>05_02_0076 -
           6365230-6365240,6365634-6365805,6365990-6366031,
           6366274-6366373,6366468-6366529,6367069-6367150,
           6368041-6368072
          Length = 166

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +2

Query: 185 KKINRDFSDAVLLAEILSVHY----PKLVEMHNYPPRNSHSLKLNNWLTLNRKVLKKL 346
           KK N D S+A  +AEI + HY     KL +       ++ +L  +N  T+N + LK+L
Sbjct: 20  KKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQL 77


>12_02_0527 +
           20047027-20047281,20048169-20048390,20048996-20049354,
           20049706-20049766,20049911-20050018
          Length = 334

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 354 AYAVTQWISSLIALQGSLNEY--LSWFGTKYV 443
           A+    W ++LIA+ G LN+Y  +SWF    V
Sbjct: 127 AWDTLTWFAALIAMAGYLNKYGLISWFSETVV 158


>07_01_0661 + 4968089-4969741
          Length = 550

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 29/102 (28%), Positives = 49/102 (48%)
 Frame = +2

Query: 137 ESVLAWVDTFKLSRPTKKINRDFSDAVLLAEILSVHYPKLVEMHNYPPRNSHSLKLNNWL 316
           E++   +D  +L   +     D S+A L+A I +     L  +H+     S  L LN   
Sbjct: 440 EAIYEKLDEIQLKLTSAGYKPDLSEAPLVASIDNAKGAAL-RLHSERLAISFGL-LNATP 497

Query: 317 TLNRKVLKKLRLSLCCNTMDQLANCAPGVIERVLVMVRDKIR 442
               ++LK LR+   C+T+ +L +   G    V ++VRD+IR
Sbjct: 498 GAPIRILKNLRVCKDCHTISKLISKLYG----VEIIVRDRIR 535


>10_08_1024 +
           22371260-22371481,22371514-22372188,22372291-22373236,
           22389377-22389552
          Length = 672

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 325 PQGSEEVEAEPML*HNGSAR*LRSRGH*TSTCHGSGQNTSRRRVEQ 462
           P GS     +P L   G+    RSRGH   + H   +    RRVE+
Sbjct: 159 PTGSRVPHHQPSLSVTGTGSSRRSRGHDERSVHSLPERHRERRVER 204


>12_01_0977 -
           9900073-9900521,9900594-9900698,9900770-9900959,
           9901035-9901093,9901297-9901688,9901770-9902059,
           9902146-9903030
          Length = 789

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 229 DPKRSLSETSGNAQLSAEEQPFFEAQQLADA*PQGSE 339
           DP  +    S +A+ +AE QP  E+Q  A++ P G++
Sbjct: 405 DPAATEPNLSKDAEPTAESQPTAESQPTAESQPTGAQ 441


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,094,026
Number of Sequences: 37544
Number of extensions: 261824
Number of successful extensions: 798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)