Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7c18
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   1.0  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       24   7.1  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    23   9.4  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    23   9.4  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   9.4  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +1

Query: 67  PLQAIALSLEPSLIL*SARFPFAAENIRAFYETTSKLHCNLVSLTEQIIEFNIGKQI 237
           P+++I L ++   I   A FPF     R+  E + KL  NL ++  + +   +G+Q+
Sbjct: 819 PVESIVLQMKNMNIDNIANFPFPTSPGRSRLEKSLKLLSNLGAIDSEGVLTKLGEQM 875


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 128 GKRALYNIKEGSSDNAIACSGTKRVSLFNFKFILHVA 18
           GK ++   K+GSSD+ + C     V +     I+H A
Sbjct: 565 GKVSVQVFKDGSSDSEVRCDEYAAVDVMVAASIVHHA 601


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = -2

Query: 149 LMFSAANGKRALYNIKEGSSDNAIACSGTKRVSLFNFKFILHVAHKKME 3
           ++ S ANG   L+N K  S    I C      S  N    +  A+K  E
Sbjct: 410 VILSGANGSLKLWNKKTTSCIRTIECGYVLAASFINNDKCIVSAYKSGE 458


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
 Frame = +1

Query: 4   SIFLCATCKMNLKLNNETRFVPLQAIALSLEPSLIL*SARFPFAAENIRAFYETTSKLHC 183
           SI L   C   ++ N +  F  L+  +  +  S +  S        +IR   + + KL  
Sbjct: 148 SILLKGFCDA-IEKNKQGNFSKLREYSEKVTASALKESNNVTSNLHHIRIISKCSLKLKS 206

Query: 184 N-LVSLT----EQIIEFNIGKQILHRRSDFSALSSFEDLYSTISRPPKSWN 321
             LVS+     +Q ++F  G QIL   +DFS  +  E     +      WN
Sbjct: 207 MVLVSMIIPSIKQTLDFYSGSQILRLLNDFSMFNP-EQREEVLKMGTNLWN 256


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 65  TKRVSLFNFKFILHVAHKKME 3
           T+R SLF F F   ++ KK E
Sbjct: 323 TRRKSLFRFPFFRSISGKKKE 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,364,258
Number of Sequences: 5004
Number of extensions: 24757
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)