Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7c18
         (336 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0028 - 18468407-18468859,18469070-18469228,18469361-18470227     29   0.71 
02_04_0557 + 23865202-23865437,23865469-23865997                       28   1.6  
04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140     28   2.2  
07_03_1191 + 24690936-24691029,24691184-24691377                       27   2.9  
12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379     26   6.6  
11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160     26   8.7  
11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368           26   8.7  
04_03_0548 - 17035394-17035749,17035761-17036295,17036325-170364...    26   8.7  

>11_05_0028 - 18468407-18468859,18469070-18469228,18469361-18470227
          Length = 492

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = -2

Query: 329 LSWFQDLGGRLIVEYKSSNELNALKSDLLCRICFPILNSIICSVSDTRLQCN--LDVVS* 156
           LSW    G  L     +S  L +L+    C+I F    S++  ++  R+Q +  LD++  
Sbjct: 167 LSWVDITGEELACFISNSFNLESLEISSCCKIGFLKTTSVLQKLNCLRVQHSHRLDMIEI 226

Query: 155 NALMFSAANGKRALYNIKEGSS 90
           NA M S+ + +  L  I  G +
Sbjct: 227 NAPMLSSFHYRGPLTVISLGDA 248


>02_04_0557 + 23865202-23865437,23865469-23865997
          Length = 254

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 228 SYIKFYNLFCKRYKITVQFGCGLVKCSDVLSGE 130
           S+++F   +C  Y+ T   GCG+     VLSG+
Sbjct: 5   SFVRFDGRYCV-YRATPALGCGIAAAMFVLSGQ 36


>04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140
          Length = 695

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 223 IGKQILHRRSDFSALSSFEDLYSTIS 300
           +  + + R  D SALSSFE+LY+ +S
Sbjct: 616 VESETVGRSLDLSALSSFEELYACLS 641


>07_03_1191 + 24690936-24691029,24691184-24691377
          Length = 95

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -1

Query: 234 LFSYIKFYNLFCKRYKITVQFGCGLVKCSDVLSGERKASTLQY*RRFQ*QC 82
           LF  + + ++  K      ++GC   KC  +  G+ +    QY R +  QC
Sbjct: 24  LFPAVCYAHVEAKTVCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQC 74


>12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379
          Length = 881

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = +1

Query: 37   LKLNNETRFVPLQAIALSLEPSLIL*SARFPF-AAENIRAFY--ETTSKLHCNLVSLTEQ 207
            L L  +  FVP + + +S +    L   RF +     +R  +  E  +KL    +    +
Sbjct: 751  LYLRLKLHFVPDERLCISSQQFQSLMEFRFIYYEGGGLRMLFQQEAMAKLRRLQIRFRAE 810

Query: 208  IIEFNIGKQILHRRSDFSALSSFEDLYSTIS 300
             +E N G +       F  LSS EDL++TIS
Sbjct: 811  EMESNAGFEF-----SFHHLSSLEDLHATIS 836


>11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160
          Length = 306

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 260 LKSDLLCRICFPILNSIICSVSD 192
           LK DL C  C+  +  I+C++ D
Sbjct: 10  LKVDLACHKCYNKIRKILCNLQD 32


>11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368
          Length = 601

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 116 VLAFRSPLRTSEHFTRPHP 172
           +L  RSP  +S +FTRP P
Sbjct: 25  ILESRSPYESSRNFTRPSP 43


>04_03_0548 -
           17035394-17035749,17035761-17036295,17036325-17036458,
           17037053-17037134
          Length = 368

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 142 SQRRTESEHFTILKKVPVTMQ*LVVAQSAFHYL 44
           +QR  +  HFT+L   P+ +Q   +A S+  YL
Sbjct: 315 AQRHLQQAHFTVLAPTPMRLQ---LANSSVRYL 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,377,713
Number of Sequences: 37544
Number of extensions: 140107
Number of successful extensions: 334
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)