Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7c18
         (336 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   3.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   4.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   7.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   7.0  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 201 CKRYKITVQFGCGLVKCS 148
           CK Y I +   CG+V+C+
Sbjct: 46  CK-YGIAMSSACGIVQCA 62


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 190 VSLTEQIIEFNIGKQILHRRSD 255
           ++L EQI+   I KQ LH   D
Sbjct: 37  LNLMEQILLAKIEKQNLHESDD 58


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 55  TRFVPLQAIALSLEPSLI 108
           T+ +P+ A +L  EP +I
Sbjct: 441 TKDIPISACSLPCEPGMI 458


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 55  TRFVPLQAIALSLEPSLI 108
           T+ +P+ A +L  EP +I
Sbjct: 531 TKDIPISACSLPCEPGMI 548


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,769
Number of Sequences: 438
Number of extensions: 1642
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)